Variant report

Variant	rs7995795
Chromosome Location	chr13:96222531-96222532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952107	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs4771920	0.92[CEU][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs4771921	0.88[EUR][1000 genomes]
rs4773919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59483123	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72651928	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8001332	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516600	0.85[EUR][1000 genomes]
rs9516601	0.86[EUR][1000 genomes]
rs9516602	0.88[EUR][1000 genomes]
rs9525011	0.82[EUR][1000 genomes]
rs9525016	0.83[EUR][1000 genomes]
rs9525017	0.84[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs9525018	0.84[EUR][1000 genomes]
rs9525019	0.86[EUR][1000 genomes]
rs9525020	0.86[EUR][1000 genomes]
rs9525025	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9525026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9525029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525030	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9525032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7995795	UGCGL2	cis	multi-tissue	Pritchard
rs7995795	FARP1	cis	cerebellum	SCAN
rs7995795	CLDN10	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
7	chr13:96217000-96231200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:96217200-96228800	Weak transcription	NH-A	brain
9	chr13:96217200-96229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:96217800-96225400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:96217800-96231400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:96218200-96224800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:96220000-96224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr13:96220000-96229800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:96220200-96226200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:96221200-96225000	Weak transcription	Pancreas	Pancrea
17	chr13:96221200-96228000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:96221400-96228800	Weak transcription	HSMMtube	muscle
19	chr13:96221400-96229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:96222000-96222600	Enhancers	Placenta	Placenta
21	chr13:96222200-96223000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:96222400-96222800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:96222400-96222800	Enhancers	A549	lung
24	chr13:96222400-96222800	Enhancers	Hela-S3	cervix
25	chr13:96222400-96223000	Enhancers	Cortex derived primary cultured neurospheres	brain

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