Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.83[EUR][1000 genomes]
rs1952107	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771920	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771921	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773919	0.85[EUR][1000 genomes]
rs59483123	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72651928	0.83[EUR][1000 genomes]
rs7995795	0.84[EUR][1000 genomes]
rs8001332	0.85[EUR][1000 genomes]
rs9516600	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516601	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516602	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525011	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9525016	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525025	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525026	0.83[EUR][1000 genomes]
rs9525028	0.85[EUR][1000 genomes]
rs9525029	0.85[EUR][1000 genomes]
rs9525030	0.83[EUR][1000 genomes]
rs9525032	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
3	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:96192600-96195000	Enhancers	Fetal Muscle Leg	muscle
6	chr13:96193800-96195400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr13:96193800-96198800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:96194200-96199600	Weak transcription	A549	lung
9	chr13:96194400-96195200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:96194600-96204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:96194600-96204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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