Variant report

Variant	rs9525025
Chromosome Location	chr13:96209546-96209547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1952107	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4771920	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4771921	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4773919	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59483123	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72651928	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995795	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8001332	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9516600	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516601	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516602	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525011	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9525016	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525017	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525018	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525019	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525020	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525026	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9525028	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525029	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9525030	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525032	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9525025	CLDN10	cis	Artery Tibial	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96205600-96210400	Weak transcription	A549	lung
2	chr13:96206200-96209800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:96206600-96211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:96207000-96216800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:96207200-96211000	Enhancers	Pancreas	Pancrea
8	chr13:96207200-96216600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:96208400-96211400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:96208800-96210400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:96208800-96210600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:96209000-96209800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr13:96209200-96209600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr13:96209400-96209600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr13:96209400-96209600	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links