Variant report

Variant	rs9525030
Chromosome Location	chr13:96260606-96260607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1952107	0.86[EUR][1000 genomes]
rs4771920	0.87[EUR][1000 genomes]
rs4771921	0.87[EUR][1000 genomes]
rs4773919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483123	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72651928	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7995795	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001332	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9516600	0.85[EUR][1000 genomes]
rs9516601	0.86[EUR][1000 genomes]
rs9516602	0.87[EUR][1000 genomes]
rs9525011	0.82[EUR][1000 genomes]
rs9525016	0.83[EUR][1000 genomes]
rs9525017	0.85[EUR][1000 genomes]
rs9525018	0.83[EUR][1000 genomes]
rs9525019	0.86[EUR][1000 genomes]
rs9525020	0.86[EUR][1000 genomes]
rs9525025	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525026	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9525028	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525029	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525032	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
2	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
4	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
5	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
8	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
9	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:96247800-96261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:96253400-96264800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:96253600-96263200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr13:96254000-96261000	Weak transcription	Right Atrium	heart
20	chr13:96254200-96265000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr13:96254800-96263000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:96255000-96262600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr13:96255000-96262600	Weak transcription	Brain Anterior Caudate	brain
24	chr13:96255000-96273000	Weak transcription	Brain Hippocampus Middle	brain
25	chr13:96255200-96261000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:96255200-96261000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:96255200-96262800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr13:96255400-96260800	Weak transcription	Fetal Kidney	kidney
29	chr13:96256200-96262200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:96256800-96260800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:96256800-96261000	Weak transcription	Left Ventricle	heart
33	chr13:96256800-96261000	Weak transcription	Pancreas	Pancrea
34	chr13:96256800-96262800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:96256800-96270200	Weak transcription	Aorta	Aorta
36	chr13:96256800-96273000	Weak transcription	Gastric	stomach
37	chr13:96256800-96273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
39	chr13:96257000-96260800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr13:96257000-96261000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:96257000-96261600	Enhancers	Hela-S3	cervix
42	chr13:96257000-96262600	Weak transcription	Fetal Brain Female	brain
43	chr13:96257000-96265800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr13:96257000-96267800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr13:96257000-96268000	Weak transcription	Fetal Intestine Large	intestine
46	chr13:96257000-96268400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr13:96257000-96269400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr13:96257200-96261000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr13:96257200-96263200	Weak transcription	Brain Germinal Matrix	brain
50	chr13:96258200-96261000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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