Variant report

Variant rs1980791
Chromosome Location chr6:87890020-87890021
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:87866600-87890200 Weak transcription Fetal Muscle Leg muscle
2 chr6:87867000-87895600 Weak transcription HSMM muscle
3 chr6:87867000-87915600 Weak transcription NH-A brain
4 chr6:87867200-87893400 Weak transcription Adipose Nuclei Adipose
5 chr6:87868000-87933000 Weak transcription Hela-S3 cervix
6 chr6:87871400-87890200 Weak transcription Gastric stomach
7 chr6:87874200-87892600 Weak transcription NHDF-Ad bronchial
8 chr6:87874400-87924200 Weak transcription Fetal Kidney kidney
9 chr6:87875000-87910400 Weak transcription K562 blood
10 chr6:87876400-87890200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr6:87876400-87890600 Weak transcription NHLF lung
12 chr6:87879800-87923000 Weak transcription Esophagus oesophagus
13 chr6:87880200-87893000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr6:87880600-87906000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr6:87881200-87893400 Weak transcription HepG2 liver
16 chr6:87881400-87926200 Weak transcription Liver Liver
17 chr6:87881600-87893000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr6:87881600-87893200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr6:87881800-87909400 Weak transcription Fetal Brain Male brain
20 chr6:87882000-87899400 Weak transcription Duodenum Mucosa Duodenum
21 chr6:87882200-87896400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr6:87883200-87890200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr6:87883400-87890200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr6:87883400-87926200 Weak transcription Fetal Lung lung
25 chr6:87883800-87893000 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr6:87883800-87897600 Weak transcription Rectal Smooth Muscle rectum
27 chr6:87884000-87890200 Weak transcription Primary neutrophils fromperipheralblood blood
28 chr6:87884000-87890200 Weak transcription Right Ventricle heart
29 chr6:87884000-87894000 Weak transcription Primary hematopoietic stem cells blood
30 chr6:87884000-87894400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr6:87884000-87894600 Weak transcription Small Intestine intestine
32 chr6:87884000-87895200 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr6:87884000-87895200 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr6:87884000-87906000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr6:87884000-87964400 Weak transcription NHEK skin
36 chr6:87884400-87893800 Weak transcription HMEC breast
37 chr6:87884600-87897600 Weak transcription Colon Smooth Muscle Colon
38 chr6:87884600-87899400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr6:87885000-87890200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr6:87885400-87891200 Strong transcription Dnd41 blood
41 chr6:87885800-87892200 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr6:87885800-87892400 Weak transcription Stomach Mucosa stomach
43 chr6:87886200-87892400 Genic enhancers Primary T helper cells PMA-I stimulated --
44 chr6:87886400-87890800 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr6:87886600-87890600 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr6:87886600-87893600 Weak transcription Primary T cells from cord blood blood
47 chr6:87886800-87890400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr6:87887200-87892800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
49 chr6:87887400-87893800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
50 chr6:87887800-87896800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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