Variant report

Variant	rs9359734
Chromosome Location	chr6:87833268-87833269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1075068	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080595	0.82[ASN][1000 genomes]
rs1080596	0.82[ASN][1000 genomes]
rs12176253	0.85[EUR][1000 genomes]
rs12664578	0.82[ASN][1000 genomes]
rs13191422	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610331	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813847	0.84[ASN][1000 genomes]
rs1813848	0.84[ASN][1000 genomes]
rs1886751	0.86[ASN][1000 genomes]
rs1886752	0.86[ASN][1000 genomes]
rs1925687	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925688	0.84[ASN][1000 genomes]
rs1925689	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1925695	0.80[ASN][1000 genomes]
rs1977300	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980790	0.82[ASN][1000 genomes]
rs1980791	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1980792	0.82[ASN][1000 genomes]
rs1998765	0.85[ASN][1000 genomes]
rs2025489	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025630	0.85[ASN][1000 genomes]
rs2031518	0.82[ASN][1000 genomes]
rs2031519	0.85[ASN][1000 genomes]
rs2031520	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031521	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147917	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2147918	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2147920	0.80[ASN][1000 genomes]
rs2147921	0.80[ASN][1000 genomes]
rs2182181	0.80[ASN][1000 genomes]
rs2240460	0.81[EUR][1000 genomes]
rs35788380	0.85[EUR][1000 genomes]
rs3734187	0.85[EUR][1000 genomes]
rs3812130	0.85[EUR][1000 genomes]
rs3846773	0.87[EUR][1000 genomes]
rs3846774	0.87[EUR][1000 genomes]
rs3846775	0.87[EUR][1000 genomes]
rs3846776	0.87[EUR][1000 genomes]
rs3857483	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3857484	0.89[EUR][1000 genomes]
rs3932521	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4099964	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4267927	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269346	0.84[ASN][1000 genomes]
rs4391234	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489129	0.84[ASN][1000 genomes]
rs4533962	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4540237	0.84[ASN][1000 genomes]
rs4574603	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591818	0.87[EUR][1000 genomes]
rs4706289	0.82[ASN][1000 genomes]
rs4707346	0.80[ASN][1000 genomes]
rs4707348	0.88[EUR][1000 genomes]
rs4707357	0.85[EUR][1000 genomes]
rs62439492	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62439493	0.81[ASN][1000 genomes]
rs6454584	0.84[ASN][1000 genomes]
rs6454587	0.84[ASN][1000 genomes]
rs6454588	0.84[ASN][1000 genomes]
rs6454589	0.86[EUR][1000 genomes]
rs6454590	0.80[ASN][1000 genomes]
rs6454591	0.82[ASN][1000 genomes]
rs6454592	0.81[ASN][1000 genomes]
rs6454593	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6454596	0.84[EUR][1000 genomes]
rs6454597	0.84[EUR][1000 genomes]
rs6454599	0.85[EUR][1000 genomes]
rs6899394	0.85[EUR][1000 genomes]
rs6904310	0.82[ASN][1000 genomes]
rs6907805	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909021	0.84[ASN][1000 genomes]
rs6909200	0.82[ASN][1000 genomes]
rs6910991	0.87[EUR][1000 genomes]
rs6912970	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913932	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6916994	0.84[EUR][1000 genomes]
rs6917455	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917931	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921007	0.85[EUR][1000 genomes]
rs6921619	0.85[ASN][1000 genomes]
rs6926563	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6926838	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6927748	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6929920	0.85[ASN][1000 genomes]
rs6932678	0.85[EUR][1000 genomes]
rs6933046	0.89[EUR][1000 genomes]
rs6934603	0.85[EUR][1000 genomes]
rs6934717	0.85[ASN][1000 genomes]
rs6937874	0.85[EUR][1000 genomes]
rs6940544	0.84[EUR][1000 genomes]
rs7453986	0.85[EUR][1000 genomes]
rs7739034	0.82[ASN][1000 genomes]
rs7739726	0.82[ASN][1000 genomes]
rs7742478	0.82[ASN][1000 genomes]
rs7742710	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7748191	0.82[ASN][1000 genomes]
rs7751029	0.81[ASN][1000 genomes]
rs7753030	0.85[EUR][1000 genomes]
rs7755883	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7757199	0.84[ASN][1000 genomes]
rs7757827	0.80[ASN][1000 genomes]
rs7760278	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761970	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762640	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763365	0.82[ASN][1000 genomes]
rs7763371	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766324	0.82[ASN][1000 genomes]
rs7767449	0.82[ASN][1000 genomes]
rs7768575	0.82[ASN][1000 genomes]
rs7774080	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774603	0.89[EUR][1000 genomes]
rs7774771	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7774872	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776407	0.82[ASN][1000 genomes]
rs9294367	0.84[ASN][1000 genomes]
rs9294370	0.83[ASN][1000 genomes]
rs9294371	0.81[ASN][1000 genomes]
rs9294372	0.86[ASN][1000 genomes]
rs9294374	0.86[EUR][1000 genomes]
rs9344676	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344677	0.86[ASN][1000 genomes]
rs9344690	0.80[ASN][1000 genomes]
rs9344691	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9344695	0.87[EUR][1000 genomes]
rs9344696	0.86[EUR][1000 genomes]
rs9351114	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9351117	0.85[ASN][1000 genomes]
rs9353450	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353452	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353453	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353455	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9353456	0.85[ASN][1000 genomes]
rs9353462	0.85[ASN][1000 genomes]
rs9353463	0.82[ASN][1000 genomes]
rs9353468	0.85[EUR][1000 genomes]
rs9353473	0.85[EUR][1000 genomes]
rs9359731	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359736	0.85[ASN][1000 genomes]
rs9359743	0.85[EUR][1000 genomes]
rs9362398	0.80[ASN][1000 genomes]
rs9362401	0.82[ASN][1000 genomes]
rs9362408	0.82[ASN][1000 genomes]
rs9362411	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9362413	0.88[EUR][1000 genomes]
rs9362415	0.85[EUR][1000 genomes]
rs9362417	0.85[EUR][1000 genomes]
rs9444479	0.86[ASN][1000 genomes]
rs9450620	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450647	0.85[EUR][1000 genomes]
rs9450650	0.85[EUR][1000 genomes]
rs9450652	0.84[EUR][1000 genomes]
rs994170	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9359734	C6orf163	Cis_1M	lymphoblastoid	RTeQTL
rs9359734	C6orf164	cis	Esophagus Muscularis	GTEx
rs9359734	C6orf164	cis	Whole Blood	GTEx
rs9359734	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs9359734	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87833000-87833400	Weak transcription	Primary B cells from peripheral blood	blood

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