Variant report

Variant	rs1925689
Chromosome Location	chr6:87863351-87863352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:87861210-87863425	GM12891	blood:	n/a	n/a
2	POLR2A	chr6:87863191-87863391	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:87862757..87864268-chr6:87915198..87917415,2	MCF-7	breast:
2	chr6:87860967..87863617-chr6:87863794..87865835,2	K562	blood:
3	chr6:86386962..86389714-chr6:87862273..87864563,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CGA-2	chr6:87860877-87865003	ENSG00000272008.1

No data

Variant related genes	Relation type
ZNF292	TF binding region
ENSG00000203875	Chromatin interaction
ENSG00000272008	Chromatin interaction
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 227 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs1075068	0.84[ASN][1000 genomes]
rs1080595	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1080596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1201409	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12176253	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12664578	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13191422	0.85[ASN][1000 genomes]
rs13201289	0.82[CEU][hapmap]
rs1590429	0.84[ASN][1000 genomes]
rs1610331	0.84[ASN][1000 genomes]
rs1753153	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1753154	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1813847	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813848	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183599	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1886751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925687	0.84[ASN][1000 genomes]
rs1925688	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1977300	0.84[ASN][1000 genomes]
rs1980790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980791	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1998765	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025630	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031518	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031519	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2031520	0.84[ASN][1000 genomes]
rs2031521	0.84[ASN][1000 genomes]
rs2147917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147918	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147919	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147920	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147921	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2182181	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2240460	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs242267	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs242270	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs242283	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs34474913	0.80[ASN][1000 genomes]
rs35788380	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs369674	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3734187	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs373646	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs3812130	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3812132	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs381782	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3846773	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3846774	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3846775	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3846776	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3857483	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3857484	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857485	0.80[EUR][1000 genomes]
rs3857488	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3903920	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3904088	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3932521	0.84[ASN][1000 genomes]
rs4099964	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4110984	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4110985	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4267927	0.84[ASN][1000 genomes]
rs4269346	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs440296	0.85[CEU][hapmap]
rs448580	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4489129	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451465	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4533962	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540237	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574603	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4591818	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4605853	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4706289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4707345	0.82[CEU][hapmap]
rs4707346	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707347	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707348	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707351	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707352	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707355	0.82[CEU][hapmap]
rs4707357	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4707358	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs59322	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs62439492	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62439493	0.92[ASN][1000 genomes]
rs6454581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6454583	0.92[ASN][1000 genomes]
rs6454584	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454588	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454589	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6454590	0.90[ASN][1000 genomes]
rs6454591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6454592	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454593	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454594	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6454595	0.80[EUR][1000 genomes]
rs6454596	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6454597	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6454599	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6899394	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6904310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908834	0.81[CEU][hapmap]
rs6909021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910991	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6912970	0.84[ASN][1000 genomes]
rs6913159	0.82[CEU][hapmap]
rs6913721	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913932	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914193	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916994	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6917455	0.84[ASN][1000 genomes]
rs6917931	0.84[ASN][1000 genomes]
rs6921007	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6921504	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6921619	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926563	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926686	0.82[CEU][hapmap]
rs6926831	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6926838	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6927748	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6929920	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6932641	0.81[CEU][hapmap]
rs6932678	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6933046	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6934603	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6934717	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937874	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6938885	0.82[CEU][hapmap]
rs6939075	0.85[CEU][hapmap]
rs6940325	0.82[CEU][hapmap]
rs6940544	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7453986	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7739034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7739726	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7742478	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7742710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7748191	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7748879	0.90[ASN][1000 genomes]
rs7751029	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752414	0.81[CEU][hapmap]
rs7752485	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7752882	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753030	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7755244	0.80[EUR][1000 genomes]
rs7755883	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757199	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7758618	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7760278	0.84[ASN][1000 genomes]
rs7761970	0.84[ASN][1000 genomes]
rs7762640	0.84[ASN][1000 genomes]
rs7763365	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763371	0.84[ASN][1000 genomes]
rs7766324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767449	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7774080	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774603	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774771	0.82[ASN][1000 genomes]
rs7774872	0.84[ASN][1000 genomes]
rs7776407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs910563	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9294367	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294368	0.81[AMR][1000 genomes]
rs9294370	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294371	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294372	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294373	0.83[ASN][1000 genomes]
rs9294374	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9294376	0.82[CEU][hapmap]
rs9344676	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9344677	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9344690	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344691	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344693	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9344695	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9344696	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9351114	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351117	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9353450	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9353452	0.86[ASN][1000 genomes]
rs9353453	0.86[ASN][1000 genomes]
rs9353455	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353456	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353463	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353464	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9353465	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9353466	0.87[EUR][1000 genomes]
rs9353468	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9353473	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9359731	0.84[ASN][1000 genomes]
rs9359734	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9359735	0.87[ASN][1000 genomes]
rs9359736	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9359743	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9362398	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9362400	0.87[ASN][1000 genomes]
rs9362401	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9362408	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9362411	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9362413	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9362415	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9362417	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9444479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9444491	0.81[CEU][hapmap]
rs9450620	0.84[ASN][1000 genomes]
rs9450630	0.83[CEU][hapmap]
rs9450634	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9450636	0.81[CEU][hapmap]
rs9450638	0.82[CEU][hapmap]
rs9450647	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9450650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9450651	0.82[CEU][hapmap]
rs9450652	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9450653	0.81[CEU][hapmap]
rs959038	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1925689	Hs.485895	cis	multi-tissue	Pritchard
rs1925689	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs1925689	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL
rs1925689	C6orf163	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87861000-87866200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:87861200-87866600	Active TSS	Aorta	Aorta
3	chr6:87861200-87866600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:87862000-87864400	Flanking Active TSS	Fetal Brain Male	brain
5	chr6:87862200-87863400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:87862200-87863800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:87862200-87864200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:87862200-87864200	Enhancers	Fetal Heart	heart
9	chr6:87862200-87865000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:87862400-87863800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:87862400-87864400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:87862400-87864400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:87862400-87864400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:87862400-87864400	Weak transcription	Stomach Mucosa	stomach
15	chr6:87862400-87864600	Weak transcription	Spleen	Spleen
16	chr6:87862600-87863400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:87862600-87863400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:87862600-87863400	Enhancers	Thymus	Thymus
19	chr6:87862600-87863400	Weak transcription	HSMMtube	muscle
20	chr6:87862600-87863600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:87862600-87863600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:87862600-87863600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:87862600-87863800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:87862600-87863800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:87862600-87863800	Weak transcription	Fetal Intestine Large	intestine
26	chr6:87862600-87863800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:87862600-87863800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:87862600-87864000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:87862600-87864000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr6:87862600-87864000	Weak transcription	Fetal Thymus	thymus
31	chr6:87862600-87864000	Enhancers	HUVEC	blood vessel
32	chr6:87862600-87864200	Enhancers	Primary T cells from cord blood	blood
33	chr6:87862600-87864200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:87862600-87864200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:87862600-87864200	Weak transcription	Placenta	Placenta
36	chr6:87862600-87864200	Weak transcription	HSMM	muscle
37	chr6:87862600-87864400	Weak transcription	Colonic Mucosa	Colon
38	chr6:87862600-87864400	Weak transcription	Esophagus	oesophagus
39	chr6:87862600-87864400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:87862600-87864400	Weak transcription	Left Ventricle	heart
41	chr6:87862600-87864400	Weak transcription	Ovary	ovary
42	chr6:87862600-87864400	Weak transcription	Pancreas	Pancrea
43	chr6:87862600-87864400	Weak transcription	Right Ventricle	heart
44	chr6:87862600-87864600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:87862600-87864600	Weak transcription	Gastric	stomach
46	chr6:87862600-87864600	Weak transcription	Lung	lung
47	chr6:87862600-87864600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:87862600-87867400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:87862800-87863400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:87862800-87863600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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