The 2.0 version of rSNPBase

Variant report

Variant rs1080595
Chromosome Location chr6:87894556-87894557
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:87867000-87895600 Weak transcription HSMM muscle
2 chr6:87867000-87915600 Weak transcription NH-A brain
3 chr6:87868000-87933000 Weak transcription Hela-S3 cervix
4 chr6:87874400-87924200 Weak transcription Fetal Kidney kidney
5 chr6:87875000-87910400 Weak transcription K562 blood
6 chr6:87879800-87923000 Weak transcription Esophagus oesophagus
7 chr6:87880600-87906000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr6:87881400-87926200 Weak transcription Liver Liver
9 chr6:87881800-87909400 Weak transcription Fetal Brain Male brain
10 chr6:87882000-87899400 Weak transcription Duodenum Mucosa Duodenum
11 chr6:87882200-87896400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr6:87883400-87926200 Weak transcription Fetal Lung lung
13 chr6:87883800-87897600 Weak transcription Rectal Smooth Muscle rectum
14 chr6:87884000-87894600 Weak transcription Small Intestine intestine
15 chr6:87884000-87895200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr6:87884000-87895200 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr6:87884000-87906000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr6:87884000-87964400 Weak transcription NHEK skin
19 chr6:87884600-87897600 Weak transcription Colon Smooth Muscle Colon
20 chr6:87884600-87899400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr6:87887800-87896800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr6:87888200-87964200 Weak transcription HSMMtube muscle
23 chr6:87889800-87926400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr6:87890200-87905800 Weak transcription Brain Hippocampus Middle brain
25 chr6:87890200-87906000 Weak transcription Brain Cingulate Gyrus brain
26 chr6:87890200-87909400 Weak transcription Brain Substantia Nigra brain
27 chr6:87890400-87895600 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr6:87890400-87895800 Weak transcription Brain Anterior Caudate brain
29 chr6:87890400-87898400 Weak transcription Brain Inferior Temporal Lobe brain
30 chr6:87890800-87909600 Weak transcription Brain Germinal Matrix brain
31 chr6:87890800-87910000 Weak transcription Right Ventricle heart
32 chr6:87890800-87933000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr6:87891000-87895200 Weak transcription Left Ventricle heart
34 chr6:87891000-87902800 Weak transcription Pancreas Pancrea
35 chr6:87891000-87920000 Weak transcription Placenta Placenta
36 chr6:87891000-87956000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr6:87891200-87894600 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr6:87891200-87895200 Weak transcription Right Atrium heart
39 chr6:87891200-87895800 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr6:87891200-87897400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr6:87891200-87897600 Weak transcription Stomach Smooth Muscle stomach
42 chr6:87891200-87913000 Weak transcription Lung lung
43 chr6:87891200-87929200 Weak transcription Thymus Thymus
44 chr6:87891400-87895200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr6:87891400-87895200 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr6:87891400-87895200 Weak transcription Ovary ovary
47 chr6:87891400-87895600 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr6:87891400-87912800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr6:87891400-87932600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr6:87891800-87894600 Weak transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015