Variant report

Variant	rs3846776
Chromosome Location	chr6:87953679-87953680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87951720..87954611-chr6:87956928..87959093,2	K562	blood:
2	chr6:87951859..87954369-chr6:87959843..87962210,2	MCF-7	breast:

Extended variants
information (count: 208 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs107690	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs1080595	0.86[ASN][1000 genomes]
rs1080596	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1201409	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12176253	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190280	0.82[ASN][1000 genomes]
rs12664578	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13201289	0.81[CEU][hapmap]
rs173333	0.83[ASN][1000 genomes]
rs1753153	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1753154	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1813847	0.80[EUR][1000 genomes]
rs1813848	0.80[EUR][1000 genomes]
rs183599	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1886751	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1886752	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925688	0.80[EUR][1000 genomes]
rs1925689	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925695	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980790	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1980791	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1980792	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2025630	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2031518	0.86[ASN][1000 genomes]
rs2147917	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2147918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147919	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2147920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2182181	0.88[ASN][1000 genomes]
rs2240459	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2240460	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs242267	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs242270	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs242278	0.83[ASN][1000 genomes]
rs242279	0.83[ASN][1000 genomes]
rs242280	0.82[ASN][1000 genomes]
rs242281	0.82[ASN][1000 genomes]
rs242283	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs242287	0.86[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap]
rs2474349	0.94[ASN][1000 genomes]
rs2985039	0.86[ASN][1000 genomes]
rs35788380	0.85[EUR][1000 genomes]
rs369674	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs3734187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373646	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs376633	0.84[ASN][1000 genomes]
rs3812130	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs381782	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3846773	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846774	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3857484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3857485	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857488	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3903920	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3904088	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4099964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4110984	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4110985	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4391234	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs440296	0.84[CEU][hapmap]
rs445434	0.86[ASN][1000 genomes]
rs446851	0.83[ASN][1000 genomes]
rs447077	0.83[ASN][1000 genomes]
rs448580	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4489129	0.80[EUR][1000 genomes]
rs451089	0.86[ASN][1000 genomes]
rs451465	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs451829	0.86[ASN][1000 genomes]
rs4533962	0.81[EUR][1000 genomes]
rs4540237	0.81[EUR][1000 genomes]
rs4574603	0.87[EUR][1000 genomes]
rs4591818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605853	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706289	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4707345	0.81[CEU][hapmap]
rs4707346	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707348	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707351	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707352	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707355	0.81[CEU][hapmap]
rs4707356	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707358	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs586771	0.82[ASN][1000 genomes]
rs59322	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs62439492	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6454581	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs6454587	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs6454589	0.88[EUR][1000 genomes]
rs6454590	0.82[ASN][1000 genomes]
rs6454591	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454592	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6454593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6454594	0.90[ASN][1000 genomes]
rs6454595	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454597	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6454598	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454599	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6454600	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6899394	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903219	0.90[CHB][hapmap]
rs6904310	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6907805	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6908834	0.81[CEU][hapmap]
rs6909021	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909200	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs6910991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913159	0.81[CEU][hapmap]
rs6913721	0.88[ASN][1000 genomes]
rs6913932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914193	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6916994	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917432	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6921007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921504	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6921619	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6925648	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926563	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6926686	0.81[CEU][hapmap]
rs6926831	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6926838	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6927748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932678	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934603	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6938885	0.82[CEU][hapmap]
rs6939075	0.84[CEU][hapmap]
rs6940325	0.81[CEU][hapmap]
rs6940544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7453986	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739034	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739726	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7742478	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7742710	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7748191	0.86[ASN][1000 genomes]
rs7748879	0.87[ASN][1000 genomes]
rs7752414	0.81[CEU][hapmap]
rs7752485	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752882	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753030	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755244	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7757199	0.80[EUR][1000 genomes]
rs7757827	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7758618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763365	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7766324	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7767449	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7768575	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774080	0.88[EUR][1000 genomes]
rs7774603	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7776407	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs910563	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9294367	0.80[EUR][1000 genomes]
rs9294372	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9294374	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9294376	0.81[CEU][hapmap]
rs9344676	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs9344690	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9344695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344697	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9351114	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9351117	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9351124	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353450	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs9353455	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9353462	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9353463	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9353464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9353465	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353466	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9353468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353473	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9359734	0.87[EUR][1000 genomes]
rs9359740	0.81[ASN][1000 genomes]
rs9359743	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9359748	0.90[CHB][hapmap]
rs9362398	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9362401	0.80[ASN][1000 genomes]
rs9362408	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9362411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362413	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9362415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9362417	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9444479	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9444491	0.81[CEU][hapmap]
rs9450630	0.83[CEU][hapmap]
rs9450634	0.88[ASN][1000 genomes]
rs9450636	0.81[CEU][hapmap]
rs9450638	0.81[CEU][hapmap]
rs9450647	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9450650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9450651	0.81[CEU][hapmap]
rs9450652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9450653	0.81[CEU][hapmap]
rs994170	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs3846776	C6orf163	Cis_1M	lymphoblastoid	RTeQTL
rs3846776	SLC35A1	cis	parietal	SCAN
rs3846776	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs3846776	Hs.485895	cis	multi-tissue	Pritchard
rs3846776	ZNF292	cis	Lymphoblastoid	GTEx
rs3846776	C6orf162	cis	parietal	SCAN
rs3846776	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL
rs3846776	C6orf162	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87884000-87964400	Weak transcription	NHEK	skin
2	chr6:87888200-87964200	Weak transcription	HSMMtube	muscle
3	chr6:87891000-87956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:87906200-87956200	Weak transcription	A549	lung
5	chr6:87906400-87964400	Weak transcription	NHLF	lung
6	chr6:87910600-87956000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:87922200-87956200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:87923200-87956000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:87923400-87955600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:87923400-87956200	Weak transcription	Gastric	stomach
11	chr6:87923400-87956200	Weak transcription	Small Intestine	intestine
12	chr6:87923400-87969000	Weak transcription	Psoas Muscle	Psoas
13	chr6:87924000-87956200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:87924400-87966000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:87924600-87956200	Weak transcription	Right Ventricle	heart
16	chr6:87928000-87956200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:87930600-87954000	Weak transcription	HMEC	breast
18	chr6:87933200-87956200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:87933600-87956200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:87933600-87956200	Weak transcription	Lung	lung
21	chr6:87933600-87956400	Weak transcription	Esophagus	oesophagus
22	chr6:87933800-87956200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:87933800-87956200	Weak transcription	Colonic Mucosa	Colon
24	chr6:87934000-87956200	Weak transcription	Left Ventricle	heart
25	chr6:87934000-87956400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:87934200-87954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:87934400-87955600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:87934600-87964200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:87934600-87964400	Weak transcription	Brain Angular Gyrus	brain
30	chr6:87934600-87967000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:87934800-87954800	Weak transcription	NH-A	brain
32	chr6:87934800-87956000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:87934800-87956200	Weak transcription	Brain Anterior Caudate	brain
34	chr6:87934800-87956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:87934800-87958600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:87934800-87964200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:87935000-87956200	Weak transcription	HUVEC	blood vessel
38	chr6:87935200-87963400	Weak transcription	Hela-S3	cervix
39	chr6:87935200-87963600	Weak transcription	NHDF-Ad	bronchial
40	chr6:87935800-87956800	Weak transcription	Osteobl	bone
41	chr6:87936400-87961600	Weak transcription	Right Atrium	heart
42	chr6:87936800-87964200	Weak transcription	Fetal Brain Male	brain
43	chr6:87938000-87956000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:87938400-87955000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:87938600-87955400	Weak transcription	Adipose Nuclei	Adipose
46	chr6:87946000-87964400	Weak transcription	Fetal Heart	heart
47	chr6:87948200-87956000	Weak transcription	K562	blood
48	chr6:87948200-87956200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:87948200-87961400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:87948800-87971200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links