The 2.0 version of rSNPBase

Variant report

Variant rs242279
Chromosome Location chr6:88048191-88048192
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:88033000-88049000 Weak transcription Brain Inferior Temporal Lobe brain
2 chr6:88033000-88055200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:88033200-88056400 Weak transcription Liver Liver
4 chr6:88033200-88062200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr6:88039000-88051400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr6:88039000-88068400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr6:88039000-88078400 Weak transcription Fetal Stomach stomach
8 chr6:88039400-88061200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr6:88039800-88051000 Weak transcription GM12878-XiMat blood
10 chr6:88040200-88075800 Weak transcription Fetal Muscle Trunk muscle
11 chr6:88040600-88116800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr6:88040800-88052600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr6:88043600-88058400 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr6:88043800-88056400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr6:88043800-88056800 Weak transcription Primary monocytes fromperipheralblood blood
16 chr6:88043800-88061400 Weak transcription Gastric stomach
17 chr6:88043800-88068400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr6:88044000-88052400 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr6:88044000-88052600 Weak transcription Thymus Thymus
20 chr6:88044000-88053600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr6:88044000-88054000 Weak transcription Dnd41 blood
22 chr6:88044000-88054200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr6:88044000-88056000 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr6:88044000-88071400 Weak transcription Fetal Muscle Leg muscle
25 chr6:88044200-88051400 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr6:88044400-88048400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
27 chr6:88044400-88049000 Weak transcription Lung lung
28 chr6:88044400-88049800 Weak transcription Fetal Intestine Small intestine
29 chr6:88044400-88051000 Weak transcription Pancreas Pancrea
30 chr6:88044400-88053000 Weak transcription Primary T cells fromperipheralblood blood
31 chr6:88044400-88056000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr6:88044400-88056800 Weak transcription Fetal Thymus thymus
33 chr6:88044400-88076000 Weak transcription Primary hematopoietic stem cells blood
34 chr6:88044800-88048800 Weak transcription Left Ventricle heart
35 chr6:88044800-88048800 Weak transcription Right Atrium heart
36 chr6:88044800-88053800 Weak transcription Psoas Muscle Psoas
37 chr6:88044800-88072600 Weak transcription Adipose Nuclei Adipose
38 chr6:88044800-88075600 Weak transcription Fetal Lung lung
39 chr6:88045000-88054000 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr6:88045000-88054600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr6:88045000-88059800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr6:88045400-88053400 Weak transcription Primary T cells from cord blood blood
43 chr6:88046200-88055800 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr6:88046400-88050400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr6:88046400-88053400 Weak transcription Primary B cells from cord blood blood
46 chr6:88046400-88054400 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr6:88046600-88049400 Weak transcription K562 blood
48 chr6:88046600-88051600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr6:88046600-88055600 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr6:88047200-88056600 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015