Variant report

Variant	rs9351117
Chromosome Location	chr6:87879217-87879218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87860250..87862927-chr6:87878628..87880131,2	K562	blood:

Variant related genes	Relation type
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 224 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs1075068	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs107689	0.82[EUR][1000 genomes]
rs107690	0.85[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1080595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1080596	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1201409	0.86[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs12190280	0.80[EUR][1000 genomes]
rs12664578	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13191422	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1590429	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1610331	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs173333	0.83[EUR][1000 genomes]
rs1753153	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1753154	0.90[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs1813847	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1813848	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183599	0.85[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs1886751	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886752	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925687	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1925688	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925689	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925695	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1977300	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1980790	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980791	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980792	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998765	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025489	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2025630	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2031518	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031519	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031520	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2031521	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2147917	0.80[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147918	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147919	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147920	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147921	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2182181	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2240459	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs242267	0.85[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs242270	0.85[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs242278	0.83[EUR][1000 genomes]
rs242279	0.84[EUR][1000 genomes]
rs242280	0.84[EUR][1000 genomes]
rs242281	0.84[EUR][1000 genomes]
rs242283	0.90[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs242285	0.82[EUR][1000 genomes]
rs242286	0.82[EUR][1000 genomes]
rs242287	0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2474349	0.84[EUR][1000 genomes]
rs2985039	0.84[EUR][1000 genomes]
rs35788380	0.82[ASN][1000 genomes]
rs369674	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs3734187	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs373646	0.85[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs376633	0.84[EUR][1000 genomes]
rs3812130	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs3812132	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs381782	0.89[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs3846773	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3846774	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3846775	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3846776	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857483	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3857484	0.80[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3857485	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857488	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3903920	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3904088	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3932521	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4099964	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4110984	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4110985	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4267927	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269346	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4391234	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs445434	0.83[EUR][1000 genomes]
rs446851	0.84[EUR][1000 genomes]
rs447077	0.84[EUR][1000 genomes]
rs448580	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs4489129	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs451089	0.83[EUR][1000 genomes]
rs451465	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs451829	0.84[EUR][1000 genomes]
rs4533962	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4540237	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574603	0.85[ASN][1000 genomes]
rs4591818	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4605853	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706289	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707346	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707347	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707348	0.80[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707351	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707352	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707356	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4707358	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs586771	0.82[EUR][1000 genomes]
rs59322	0.89[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs62439492	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62439493	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454581	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6454583	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454584	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454587	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454588	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454589	0.85[ASN][1000 genomes]
rs6454590	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454591	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6454592	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454593	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454595	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6454598	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454600	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67734697	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6904310	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6907805	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909021	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6909200	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910991	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6912970	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6913721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913932	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6914193	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917432	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6917455	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6917931	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6921007	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6921504	0.89[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs6921619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921673	0.83[CEU][hapmap]
rs6925648	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6926563	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926831	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926838	0.90[ASN][1000 genomes]
rs6927748	0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929920	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6932678	0.82[ASN][1000 genomes]
rs6933046	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934603	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs6934717	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940544	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7739034	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739726	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7742478	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7742710	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7748191	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7748879	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7751029	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7752485	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7752882	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7755244	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755883	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7757199	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7757827	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7758618	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7760278	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7761970	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7762640	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7763365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7763371	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7766324	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768575	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7774080	0.85[ASN][1000 genomes]
rs7774603	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774771	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774872	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7776407	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs910563	0.82[CEU][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs9294367	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294368	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9294370	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294371	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294373	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9294374	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344676	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9344677	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344690	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344691	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344693	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344695	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9344697	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9351114	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9351124	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9353450	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9353452	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9353453	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9353455	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353456	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353462	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9353464	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9353465	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9353468	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9359731	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359734	0.85[ASN][1000 genomes]
rs9359735	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9359736	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9359740	0.84[EUR][1000 genomes]
rs9359743	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs9362398	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9362400	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9362401	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9362408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9362411	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362413	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362415	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs9444479	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9444484	1.00[YRI][hapmap]
rs9450620	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9450634	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9450650	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9450652	0.80[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs959038	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs994170	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs9351117	C6orf164	cis	Whole Blood	GTEx
rs9351117	SLC35A1	cis	multi-tissue	Pritchard
rs9351117	Hs.485895	cis	multi-tissue	Pritchard
rs9351117	C6orf162	Cis_1M	lymphoblastoid	RTeQTL
rs9351117	C6orf163	Cis_1M	lymphoblastoid	RTeQTL
rs9351117	C6orf164	cis	Skin Sun Exposed Lower leg	GTEx
rs9351117	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL
rs9351117	C6orf164	cis	Thyroid	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87866600-87880000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:87866600-87883600	Weak transcription	Right Ventricle	heart
3	chr6:87866600-87883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:87866600-87885400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:87866600-87886000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:87866600-87886600	Weak transcription	Aorta	Aorta
7	chr6:87866600-87889800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:87866600-87890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:87866600-87890200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:87867000-87883400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:87867000-87886000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:87867000-87895600	Weak transcription	HSMM	muscle
13	chr6:87867000-87915600	Weak transcription	NH-A	brain
14	chr6:87867200-87883200	Weak transcription	HMEC	breast
15	chr6:87867200-87893400	Weak transcription	Adipose Nuclei	Adipose
16	chr6:87867400-87880800	Weak transcription	Liver	Liver
17	chr6:87867400-87881400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:87867800-87879400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:87867800-87881000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:87867800-87883000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:87867800-87883400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:87867800-87885800	Weak transcription	Fetal Thymus	thymus
23	chr6:87867800-87886400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
25	chr6:87868200-87886000	Weak transcription	Thymus	Thymus
26	chr6:87868200-87889600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:87868400-87879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:87868400-87879400	Weak transcription	Fetal Stomach	stomach
29	chr6:87868400-87880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:87868400-87883600	Weak transcription	Small Intestine	intestine
31	chr6:87868600-87889800	Weak transcription	Fetal Intestine Large	intestine
32	chr6:87868800-87881400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:87869000-87882800	Weak transcription	Primary B cells from cord blood	blood
34	chr6:87869000-87885200	Weak transcription	Placenta	Placenta
35	chr6:87869400-87885800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:87869600-87884800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:87870000-87882800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:87871400-87880200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:87871400-87883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:87871400-87890000	Weak transcription	Pancreas	Pancrea
41	chr6:87871400-87890200	Weak transcription	Gastric	stomach
42	chr6:87871600-87880200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:87872600-87880400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:87872800-87880800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:87872800-87883000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:87873400-87883200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:87874000-87883000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:87874200-87879400	Weak transcription	Spleen	Spleen
49	chr6:87874200-87879600	Weak transcription	HepG2	liver
50	chr6:87874200-87881400	Weak transcription	Fetal Brain Female	brain

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