The 2.0 version of rSNPBase

Variant report

Variant rs242278
Chromosome Location chr6:88047059-88047060
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:88033000-88049000 Weak transcription Brain Inferior Temporal Lobe brain
2 chr6:88033000-88055200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:88033200-88048000 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr6:88033200-88056400 Weak transcription Liver Liver
5 chr6:88033200-88062200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr6:88039000-88051400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr6:88039000-88068400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr6:88039000-88078400 Weak transcription Fetal Stomach stomach
9 chr6:88039400-88047800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr6:88039400-88061200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr6:88039800-88051000 Weak transcription GM12878-XiMat blood
12 chr6:88040200-88075800 Weak transcription Fetal Muscle Trunk muscle
13 chr6:88040600-88116800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr6:88040800-88052600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr6:88043600-88058400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr6:88043800-88056400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr6:88043800-88056800 Weak transcription Primary monocytes fromperipheralblood blood
18 chr6:88043800-88061400 Weak transcription Gastric stomach
19 chr6:88043800-88068400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr6:88044000-88052400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr6:88044000-88052600 Weak transcription Thymus Thymus
22 chr6:88044000-88053600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr6:88044000-88054000 Weak transcription Dnd41 blood
24 chr6:88044000-88054200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr6:88044000-88056000 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr6:88044000-88071400 Weak transcription Fetal Muscle Leg muscle
27 chr6:88044200-88051400 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr6:88044400-88047400 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr6:88044400-88048000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr6:88044400-88048400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr6:88044400-88049000 Weak transcription Lung lung
32 chr6:88044400-88049800 Weak transcription Fetal Intestine Small intestine
33 chr6:88044400-88051000 Weak transcription Pancreas Pancrea
34 chr6:88044400-88053000 Weak transcription Primary T cells fromperipheralblood blood
35 chr6:88044400-88056000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
36 chr6:88044400-88056800 Weak transcription Fetal Thymus thymus
37 chr6:88044400-88076000 Weak transcription Primary hematopoietic stem cells blood
38 chr6:88044800-88048800 Weak transcription Left Ventricle heart
39 chr6:88044800-88048800 Weak transcription Right Atrium heart
40 chr6:88044800-88053800 Weak transcription Psoas Muscle Psoas
41 chr6:88044800-88072600 Weak transcription Adipose Nuclei Adipose
42 chr6:88044800-88075600 Weak transcription Fetal Lung lung
43 chr6:88045000-88054000 Weak transcription Primary neutrophils fromperipheralblood blood
44 chr6:88045000-88054600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr6:88045000-88059800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr6:88045400-88053400 Weak transcription Primary T cells from cord blood blood
47 chr6:88046000-88047200 Enhancers HUES64 Cell Line embryonic stem cell
48 chr6:88046200-88055800 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr6:88046400-88050400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr6:88046400-88053400 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015