Variant report

Variant	rs369674
Chromosome Location	chr6:88043402-88043403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:88043390-88043722	Hela-S3	cervix:	n/a	n/a
2	SETDB1	chr6:88043333-88043608	U2OS	brain:	n/a	n/a
3	KAP1	chr6:88043367-88043932	HEK293	kidney:	n/a	n/a
4	CEBPB	chr6:88043399-88043713	K562	blood:	n/a	n/a
5	CEBPB	chr6:88043397-88043709	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88040776..88043456-chr6:88056096..88058777,2	MCF-7	breast:
2	chr6:88041023..88043490-chr6:88050888..88053357,2	K562	blood:

Variant related genes	Relation type
GJB7	TF binding region
ENSG00000203872	Chromatin interaction

Extended variants
information (count: 188 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs107689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs107690	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1080595	0.84[EUR][1000 genomes]
rs1080596	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1201409	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12176253	0.87[ASN][1000 genomes]
rs12190280	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12207825	0.85[EUR][1000 genomes]
rs12664578	0.84[EUR][1000 genomes]
rs173333	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1753153	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1753154	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1813847	0.84[EUR][1000 genomes]
rs1813848	0.84[EUR][1000 genomes]
rs183599	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886751	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs1886752	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1925688	0.84[EUR][1000 genomes]
rs1925689	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1925695	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs1980790	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1980792	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2025630	0.84[EUR][1000 genomes]
rs2031518	0.83[EUR][1000 genomes]
rs2147917	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2147918	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2147919	0.83[EUR][1000 genomes]
rs2147920	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2147921	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2182181	0.83[EUR][1000 genomes]
rs2207144	0.85[MEX][hapmap]
rs2240459	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2240460	0.85[ASN][1000 genomes]
rs242267	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs242270	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs242278	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs242279	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs242280	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs242281	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs242283	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242285	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242286	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242287	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2474349	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2985039	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367353	0.80[EUR][1000 genomes]
rs3734187	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs373646	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812130	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]
rs3812132	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs381782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3846773	0.84[ASN][1000 genomes]
rs3846774	0.84[ASN][1000 genomes]
rs3846775	0.84[ASN][1000 genomes]
rs3846776	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs3857483	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3857484	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs3857485	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857488	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs390272	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3903920	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs3904088	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs395358	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4099964	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4110984	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4110985	0.85[EUR][1000 genomes]
rs4269346	0.83[EUR][1000 genomes]
rs445434	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs446851	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs447077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs448580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4489129	0.83[EUR][1000 genomes]
rs451089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs451465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4540237	0.82[EUR][1000 genomes]
rs4591818	0.84[ASN][1000 genomes]
rs4605853	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs4706289	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs4707346	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs4707347	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4707348	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4707351	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4707352	0.84[EUR][1000 genomes]
rs4707356	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4707357	0.87[ASN][1000 genomes]
rs4707358	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs499373	0.85[EUR][1000 genomes]
rs586771	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59322	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6454584	0.83[EUR][1000 genomes]
rs6454587	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs6454588	0.83[EUR][1000 genomes]
rs6454591	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6454592	0.84[EUR][1000 genomes]
rs6454593	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6454594	0.84[EUR][1000 genomes]
rs6454595	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6454596	0.87[ASN][1000 genomes]
rs6454597	0.86[ASN][1000 genomes]
rs6454598	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6454599	0.86[ASN][1000 genomes]
rs6454600	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6899394	0.87[ASN][1000 genomes]
rs6903219	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes]
rs6904310	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs6907805	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs6909021	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs6909200	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs6910991	0.84[ASN][1000 genomes]
rs6913721	0.84[EUR][1000 genomes]
rs6913932	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6914193	0.85[EUR][1000 genomes]
rs6916994	0.87[ASN][1000 genomes]
rs6917432	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6921007	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6921504	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921619	0.84[EUR][1000 genomes]
rs6925648	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6926831	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs6927748	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6932678	0.84[ASN][1000 genomes]
rs6933046	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6934603	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]
rs6937874	0.87[ASN][1000 genomes]
rs6940544	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7453986	0.87[ASN][1000 genomes]
rs7739034	0.82[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs7739726	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7742478	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7742710	0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7746545	0.85[EUR][1000 genomes]
rs7747129	0.84[EUR][1000 genomes]
rs7748191	0.83[EUR][1000 genomes]
rs7748879	0.80[EUR][1000 genomes]
rs7751029	0.83[EUR][1000 genomes]
rs7752485	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7752882	0.85[EUR][1000 genomes]
rs7753030	0.87[ASN][1000 genomes]
rs7755244	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755883	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7757199	0.84[EUR][1000 genomes]
rs7757827	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7758618	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7763365	0.84[EUR][1000 genomes]
rs7766324	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7767449	0.84[EUR][1000 genomes]
rs7768575	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7774603	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7776407	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs910563	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294367	0.84[EUR][1000 genomes]
rs9294370	0.83[EUR][1000 genomes]
rs9294371	0.81[EUR][1000 genomes]
rs9294372	0.84[EUR][1000 genomes]
rs9344690	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs9344691	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9344693	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9344695	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs9344696	0.87[ASN][1000 genomes]
rs9344697	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9351117	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs9351124	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9353462	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9353463	0.84[EUR][1000 genomes]
rs9353464	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs9353465	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9353468	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9353473	0.87[ASN][1000 genomes]
rs9353483	0.85[EUR][1000 genomes]
rs9359743	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]
rs9359748	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs9362398	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9362401	0.81[EUR][1000 genomes]
rs9362408	0.84[EUR][1000 genomes]
rs9362411	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9362415	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs9362417	0.86[ASN][1000 genomes]
rs9362427	0.84[EUR][1000 genomes]
rs9444479	0.85[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs9450634	0.83[EUR][1000 genomes]
rs9450647	0.87[ASN][1000 genomes]
rs9450650	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9450652	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9450701	0.80[MEX][hapmap]
rs994170	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5386	chr6:88038551-88044921	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs369674	C6orf162	cis	cerebellum	SCAN
rs369674	Hs.485895	cis	multi-tissue	Pritchard
rs369674	ZNF292	cis	Lymphoblastoid	GTEx
rs369674	SLC35A1	cis	multi-tissue	Pritchard
rs369674	C6orf164	cis	Esophagus Muscularis	GTEx
rs369674	C6orf162	cis	parietal	SCAN
rs369674	SLC35A1	cis	parietal	SCAN
rs369674	C6orf164	cis	Artery Tibial	GTEx
rs369674	C6orf164	cis	Thyroid	GTEx
rs369674	C6orf164	cis	Whole Blood	GTEx
rs369674	C6orf164	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88043600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:88033000-88043600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:88033000-88043600	Weak transcription	Spleen	Spleen
4	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:88033200-88043600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:88033200-88043600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:88033200-88043600	Weak transcription	Pancreas	Pancrea
9	chr6:88033200-88045200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:88033200-88045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:88033200-88048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:88033200-88056400	Weak transcription	Liver	Liver
13	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:88039000-88044200	Weak transcription	Hela-S3	cervix
15	chr6:88039000-88051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
18	chr6:88039200-88046000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:88039400-88047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:88039400-88061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:88039600-88046000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:88039800-88044400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:88039800-88051000	Weak transcription	GM12878-XiMat	blood
24	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:88040800-88052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:88041000-88044400	Weak transcription	Primary B cells from cord blood	blood
28	chr6:88042400-88043600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:88042400-88045000	Enhancers	K562	blood
30	chr6:88042400-88046400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:88042600-88044800	Enhancers	Left Ventricle	heart
32	chr6:88042800-88043600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:88042800-88043600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:88042800-88043800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:88042800-88044000	Enhancers	Fetal Muscle Leg	muscle
36	chr6:88042800-88044400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:88042800-88044400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:88042800-88044400	Enhancers	Fetal Thymus	thymus
39	chr6:88042800-88044400	Enhancers	Lung	lung
40	chr6:88042800-88045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:88042800-88045000	Enhancers	Right Ventricle	heart
42	chr6:88042800-88045800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:88043000-88043600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:88043000-88044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:88043000-88044000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:88043000-88044400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr6:88043000-88044400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:88043000-88044400	Enhancers	Osteobl	bone
49	chr6:88043000-88044800	Enhancers	Right Atrium	heart
50	chr6:88043000-88045200	Enhancers	NHLF	lung

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