Variant report

Variant	rs2167144
Chromosome Location	chr3:155994762-155994763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs11706532	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13058807	1.00[ASN][1000 genomes]
rs13059614	1.00[ASN][1000 genomes]
rs13062883	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs13063680	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13065118	1.00[ASN][1000 genomes]
rs13069492	1.00[ASN][1000 genomes]
rs13069920	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs13070168	0.91[CEU][hapmap]
rs13070615	0.91[CEU][hapmap]
rs13070956	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs13074749	1.00[ASN][1000 genomes]
rs13076854	1.00[ASN][1000 genomes]
rs13077031	0.91[CEU][hapmap]
rs13077745	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13077891	1.00[ASN][1000 genomes]
rs13077893	1.00[ASN][1000 genomes]
rs13078030	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13079647	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13081735	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085088	0.91[CEU][hapmap]
rs13085540	1.00[ASN][1000 genomes]
rs13086158	1.00[ASN][1000 genomes]
rs13086539	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs13086617	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs13086888	1.00[ASN][1000 genomes]
rs13092781	1.00[ASN][1000 genomes]
rs13093003	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13094737	1.00[ASN][1000 genomes]
rs13098116	1.00[ASN][1000 genomes]
rs13099875	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs1499053	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs16825721	1.00[ASN][1000 genomes]
rs16825722	1.00[ASN][1000 genomes]
rs17350157	1.00[ASN][1000 genomes]
rs2013676	1.00[ASN][1000 genomes]
rs34176040	1.00[ASN][1000 genomes]
rs34431563	1.00[ASN][1000 genomes]
rs34447473	1.00[ASN][1000 genomes]
rs34582489	1.00[ASN][1000 genomes]
rs34611996	1.00[ASN][1000 genomes]
rs34636155	1.00[ASN][1000 genomes]
rs34721485	1.00[ASN][1000 genomes]
rs34769075	1.00[ASN][1000 genomes]
rs34786673	1.00[ASN][1000 genomes]
rs34859273	1.00[ASN][1000 genomes]
rs34965136	1.00[ASN][1000 genomes]
rs34971897	1.00[ASN][1000 genomes]
rs35081098	1.00[ASN][1000 genomes]
rs35120330	1.00[ASN][1000 genomes]
rs35306833	1.00[ASN][1000 genomes]
rs35336094	1.00[ASN][1000 genomes]
rs35385116	1.00[ASN][1000 genomes]
rs35388604	1.00[ASN][1000 genomes]
rs35692708	1.00[ASN][1000 genomes]
rs35938711	1.00[ASN][1000 genomes]
rs35972274	1.00[ASN][1000 genomes]
rs36101183	1.00[ASN][1000 genomes]
rs36106222	1.00[ASN][1000 genomes]
rs36124391	1.00[ASN][1000 genomes]
rs4378930	1.00[ASN][1000 genomes]
rs55868315	1.00[ASN][1000 genomes]
rs58487502	1.00[ASN][1000 genomes]
rs59289038	1.00[ASN][1000 genomes]
rs6441048	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs66496214	1.00[ASN][1000 genomes]
rs66718940	1.00[ASN][1000 genomes]
rs66901908	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67049008	1.00[ASN][1000 genomes]
rs67139403	1.00[ASN][1000 genomes]
rs67148190	1.00[ASN][1000 genomes]
rs67341546	1.00[ASN][1000 genomes]
rs67420553	1.00[ASN][1000 genomes]
rs67482406	1.00[ASN][1000 genomes]
rs6770125	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs6775190	1.00[ASN][1000 genomes]
rs67780510	1.00[ASN][1000 genomes]
rs67899274	1.00[ASN][1000 genomes]
rs67955446	1.00[ASN][1000 genomes]
rs68176279	1.00[ASN][1000 genomes]
rs68188495	1.00[ASN][1000 genomes]
rs71310462	1.00[ASN][1000 genomes]
rs71310463	1.00[ASN][1000 genomes]
rs71310465	1.00[ASN][1000 genomes]
rs71623492	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162706	1.00[ASN][1000 genomes]
rs73873481	1.00[ASN][1000 genomes]
rs7615469	1.00[ASN][1000 genomes]
rs7617514	1.00[ASN][1000 genomes]
rs7627181	1.00[ASN][1000 genomes]
rs7627649	1.00[ASN][1000 genomes]
rs7627831	1.00[ASN][1000 genomes]
rs7639203	1.00[ASN][1000 genomes]
rs7641186	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644218	1.00[ASN][1000 genomes]
rs7649451	1.00[ASN][1000 genomes]
rs9683003	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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