Variant report

Variant	rs218306
Chromosome Location	chr2:172056250-172056251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172054543..172057052-chr2:172065152..172066694,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10177560	1.00[CHB][hapmap]
rs10183486	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10189480	1.00[CHB][hapmap]
rs10191270	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10198197	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10199500	1.00[CHB][hapmap]
rs10207361	1.00[CHB][hapmap]
rs10208341	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10210693	1.00[CHB][hapmap]
rs10210883	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1025240	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1035825	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1035826	1.00[CHB][hapmap]
rs1035828	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10930453	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10930455	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10930456	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10930457	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12692962	1.00[CHB][hapmap]
rs12997252	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12998296	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13002517	1.00[CHB][hapmap]
rs13003218	1.00[CHB][hapmap]
rs13004273	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13008199	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13010307	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13016705	1.00[CHB][hapmap]
rs13030784	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13034529	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13036123	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13402107	1.00[CHB][hapmap]
rs13403285	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13411575	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13425247	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13427723	1.00[CHB][hapmap]
rs1344237	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1529378	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1978592	0.86[JPT][hapmap]
rs1991370	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2033160	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2052808	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2081715	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs218307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218308	0.91[ASN][1000 genomes]
rs218309	0.97[ASN][1000 genomes]
rs218310	0.88[ASN][1000 genomes]
rs2195072	1.00[CHB][hapmap]
rs2356607	1.00[CHB][hapmap]
rs2356608	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2555922	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2557794	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2676131	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2676151	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2723241	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3755121	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3770423	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3770428	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3770433	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4564745	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4668368	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs5028603	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6433276	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6710035	1.00[CHB][hapmap]
rs6716127	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6730417	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6733178	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6754315	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6761642	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6761759	1.00[CHB][hapmap]
rs6761889	1.00[CHB][hapmap]
rs719548	1.00[CHB][hapmap]
rs7579424	1.00[CHB][hapmap]
rs7580629	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7587244	1.00[CHB][hapmap]
rs7593193	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7603316	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7606502	1.00[CHB][hapmap]
rs7606822	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9646785	1.00[CHB][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs218306	TLK1	cis	lesional skin	skin_eQTL
rs218306	GAD1	cis	parietal	SCAN
rs218306	TLK1	cis	normal skin	skin_eQTL
rs218306	TLK1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172054600-172066200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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