Variant report

Variant	rs1978592
Chromosome Location	chr2:171883325-171883326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171877480..171879618-chr2:171882809..171885447,2	K562	blood:
2	chr2:171882729..171885318-chr2:172016044..172018352,2	MCF-7	breast:
3	chr2:171877406..171879350-chr2:171882003..171883871,2	K562	blood:
4	chr2:171882425..171884151-chr2:171886265..171887977,2	K562	blood:
5	chr2:171880491..171883129-chr2:171883243..171885535,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 228 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10171850	0.92[CEU][hapmap];0.95[TSI][hapmap]
rs10177560	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10182205	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10182207	0.81[ASN][1000 genomes]
rs10183486	0.92[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10186343	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189480	0.85[ASN][1000 genomes]
rs10191270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10193992	0.81[ASN][1000 genomes]
rs10197081	0.81[ASN][1000 genomes]
rs10198197	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10199500	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10206289	0.81[ASN][1000 genomes]
rs10207361	0.85[ASN][1000 genomes]
rs10208271	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10208341	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210693	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210791	0.90[GIH][hapmap];0.81[MEX][hapmap];0.87[MKK][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210883	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025240	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025241	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025242	0.91[ASN][1000 genomes]
rs1035825	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1035826	0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs1035827	0.85[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs1035828	0.80[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045327	0.87[CHD][hapmap]
rs10515934	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10803854	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs10803855	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930449	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10930453	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930455	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930456	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930457	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11553951	0.88[ASN][1000 genomes]
rs11674590	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696064	0.80[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs11899305	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902369	0.88[CEU][hapmap]
rs12053543	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12477649	0.96[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs12612871	0.96[CEU][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs12614580	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12618232	0.83[EUR][1000 genomes]
rs12618898	0.87[CEU][hapmap]
rs12624094	0.87[EUR][1000 genomes]
rs12988738	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12997252	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12998296	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13002517	0.88[ASN][1000 genomes]
rs13003218	0.88[ASN][1000 genomes]
rs13004273	1.00[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006705	0.81[ASN][1000 genomes]
rs13007415	0.88[ASN][1000 genomes]
rs13008199	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap]
rs13010307	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13016705	0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs13025198	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13026444	0.88[ASN][1000 genomes]
rs13026662	0.87[EUR][1000 genomes]
rs13030784	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13034529	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13036123	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13395669	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13401706	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13402107	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13403285	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13410683	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13411575	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13417709	0.85[ASN][1000 genomes]
rs13419444	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13420171	0.81[ASN][1000 genomes]
rs13425247	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13427723	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13428613	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13430489	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13432325	0.81[ASN][1000 genomes]
rs13432813	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1344236	0.85[ASN][1000 genomes]
rs1344237	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1529378	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529391	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs16859050	0.84[CEU][hapmap]
rs16859066	1.00[JPT][hapmap]
rs16859081	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16859142	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17283147	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962841	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991370	0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2010114	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2033160	1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052808	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059724	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2098999	0.84[CEU][hapmap]
rs2114595	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114596	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2114738	0.85[EUR][1000 genomes]
rs2195072	0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs2195116	0.88[CEU][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2195117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217154	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356423	0.82[EUR][1000 genomes]
rs2356593	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356597	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356599	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356607	0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs2356608	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2555922	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2557794	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2557799	0.91[EUR][1000 genomes]
rs2676131	0.88[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676151	1.00[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723233	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723241	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2723242	0.88[ASN][1000 genomes]
rs28740798	0.85[ASN][1000 genomes]
rs34004615	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34017170	0.88[ASN][1000 genomes]
rs34143031	0.85[ASN][1000 genomes]
rs34303929	0.88[ASN][1000 genomes]
rs34453397	0.81[ASN][1000 genomes]
rs34518725	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34563349	0.91[ASN][1000 genomes]
rs34622740	0.85[ASN][1000 genomes]
rs34792013	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960296	0.88[ASN][1000 genomes]
rs35047553	0.91[ASN][1000 genomes]
rs35112379	0.85[ASN][1000 genomes]
rs35173138	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35312173	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35332006	0.88[ASN][1000 genomes]
rs35381957	0.88[ASN][1000 genomes]
rs35864840	0.88[ASN][1000 genomes]
rs35900609	1.00[ASN][1000 genomes]
rs35988467	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36058634	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731990	0.84[EUR][1000 genomes]
rs3731991	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755121	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755124	0.84[CEU][hapmap]
rs3755125	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs3755126	0.84[CEU][hapmap]
rs3770423	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770428	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770433	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770435	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3770438	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs3770440	1.00[JPT][hapmap]
rs3770442	0.87[CHD][hapmap]
rs4544401	0.83[EUR][1000 genomes]
rs4564745	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4667673	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs4668343	0.84[CEU][hapmap]
rs4668354	0.92[CEU][hapmap]
rs4668355	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs4668368	1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028603	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758155	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55987132	0.91[ASN][1000 genomes]
rs55996750	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56114146	1.00[ASN][1000 genomes]
rs56402728	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56405950	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57236236	0.88[ASN][1000 genomes]
rs6433276	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709077	0.88[ASN][1000 genomes]
rs6710035	0.85[ASN][1000 genomes]
rs6710714	0.81[AMR][1000 genomes]
rs6711287	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6714164	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6715332	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6716127	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6719647	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6722537	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730417	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6732229	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6733178	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6734542	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734903	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6742797	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs6742854	0.83[EUR][1000 genomes]
rs6743201	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6749427	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6750849	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754315	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6757510	0.88[ASN][1000 genomes]
rs6761596	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761642	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761759	0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs6761889	0.88[ASN][1000 genomes]
rs71415235	1.00[ASN][1000 genomes]
rs719548	0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs72886381	0.88[ASN][1000 genomes]
rs73013441	0.85[ASN][1000 genomes]
rs731693	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7421377	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs754058	0.87[TSI][hapmap]
rs7568083	0.85[ASN][1000 genomes]
rs7578491	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7579424	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs7580629	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581195	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7581314	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7582822	0.87[TSI][hapmap]
rs7585418	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585619	0.85[ASN][1000 genomes]
rs7587244	0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs7593186	0.88[ASN][1000 genomes]
rs7593193	0.88[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594177	0.81[ASN][1000 genomes]
rs7597940	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7600914	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603316	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7603340	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603460	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7606502	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7606822	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930035	0.96[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs930036	0.96[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs958183	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs960222	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs964172	0.96[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs9646785	0.85[ASN][1000 genomes]
rs965518	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv834456	chr2:171874210-172014659	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1978592	TLK1	Cis_1M	lymphoblastoid	RTeQTL
rs1978592	DLX1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171830600-171902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:171830800-171891400	Weak transcription	Spleen	Spleen
3	chr2:171831400-171916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:171841000-171895800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:171841600-171940000	Weak transcription	Right Ventricle	heart
6	chr2:171842200-171892000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:171842600-171912000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:171846000-171898000	Weak transcription	Psoas Muscle	Psoas
9	chr2:171846200-171901000	Weak transcription	Fetal Brain Male	brain
10	chr2:171847400-171902600	Weak transcription	Brain Angular Gyrus	brain
11	chr2:171850400-171892000	Weak transcription	Brain Anterior Caudate	brain
12	chr2:171853200-171898800	Weak transcription	Aorta	Aorta
13	chr2:171858000-171891800	Weak transcription	Fetal Brain Female	brain
14	chr2:171858000-171892000	Weak transcription	Brain Substantia Nigra	brain
15	chr2:171859400-171892000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:171859600-171897000	Weak transcription	Esophagus	oesophagus
17	chr2:171862200-171890600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:171862600-171918400	Weak transcription	Brain Germinal Matrix	brain
19	chr2:171862800-171885400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:171862800-171885800	Weak transcription	Ovary	ovary
21	chr2:171862800-171899000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:171862800-171931200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:171863200-171886200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:171863200-171896200	Weak transcription	Hela-S3	cervix
25	chr2:171865800-171905000	Weak transcription	Fetal Heart	heart
26	chr2:171867800-171898600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:171867800-171898800	Weak transcription	Colonic Mucosa	Colon
28	chr2:171867800-171916200	Weak transcription	Gastric	stomach
29	chr2:171868000-171890800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:171868200-171891800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:171871200-171897800	Weak transcription	Pancreas	Pancrea
32	chr2:171871400-171883800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr2:171871400-171891200	Weak transcription	Colon Smooth Muscle	Colon
34	chr2:171871400-171898000	Weak transcription	Lung	lung
35	chr2:171871600-171892000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:171873000-171891600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:171874800-171916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:171875000-171892200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr2:171876600-171885800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:171877400-171890400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr2:171877800-171887400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr2:171877800-171892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:171878000-171891800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:171878000-171943200	Weak transcription	Small Intestine	intestine
45	chr2:171878200-171892200	Weak transcription	HUVEC	blood vessel
46	chr2:171878400-171884800	Weak transcription	HMEC	breast
47	chr2:171878400-171885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:171878600-171891800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:171878800-171884200	Weak transcription	Osteobl	bone
50	chr2:171878800-171889000	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

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