The 2.0 version of rSNPBase

Variant report

Variant rs55996750
Chromosome Location chr2:171878189-171878190
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:171830600-171902800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:171830800-171891400 Weak transcription Spleen Spleen
3 chr2:171831400-171879200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr2:171831400-171916200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr2:171840800-171879200 Weak transcription Brain Hippocampus Middle brain
6 chr2:171841000-171895800 Weak transcription H9 Cell Line embryonic stem cell
7 chr2:171841600-171940000 Weak transcription Right Ventricle heart
8 chr2:171842200-171892000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:171842600-171912000 Weak transcription Placenta Amnion Placenta Amnion
10 chr2:171846000-171898000 Weak transcription Psoas Muscle Psoas
11 chr2:171846200-171901000 Weak transcription Fetal Brain Male brain
12 chr2:171847400-171902600 Weak transcription Brain Angular Gyrus brain
13 chr2:171847800-171878200 Weak transcription Stomach Mucosa stomach
14 chr2:171850400-171892000 Weak transcription Brain Anterior Caudate brain
15 chr2:171851800-171881800 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr2:171853200-171898800 Weak transcription Aorta Aorta
17 chr2:171858000-171891800 Weak transcription Fetal Brain Female brain
18 chr2:171858000-171892000 Weak transcription Brain Substantia Nigra brain
19 chr2:171859400-171892000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr2:171859600-171897000 Weak transcription Esophagus oesophagus
21 chr2:171862200-171890600 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr2:171862600-171918400 Weak transcription Brain Germinal Matrix brain
23 chr2:171862800-171878600 Weak transcription HSMMtube muscle
24 chr2:171862800-171879400 Weak transcription Thymus Thymus
25 chr2:171862800-171885400 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr2:171862800-171885800 Weak transcription Ovary ovary
27 chr2:171862800-171899000 Weak transcription Brain Cingulate Gyrus brain
28 chr2:171862800-171931200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr2:171863200-171886200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr2:171863200-171896200 Weak transcription Hela-S3 cervix
31 chr2:171864200-171878600 Weak transcription H1 Cell Line embryonic stem cell
32 chr2:171865800-171905000 Weak transcription Fetal Heart heart
33 chr2:171867800-171878800 Weak transcription Fetal Lung lung
34 chr2:171867800-171898600 Weak transcription Rectal Smooth Muscle rectum
35 chr2:171867800-171898800 Weak transcription Colonic Mucosa Colon
36 chr2:171867800-171916200 Weak transcription Gastric stomach
37 chr2:171868000-171890800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr2:171868200-171879000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr2:171868200-171891800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr2:171868400-171878800 Weak transcription Fetal Kidney kidney
41 chr2:171870000-171879400 Weak transcription Left Ventricle heart
42 chr2:171870800-171878800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr2:171871200-171879400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr2:171871200-171897800 Weak transcription Pancreas Pancrea
45 chr2:171871400-171878800 Weak transcription Adipose Nuclei Adipose
46 chr2:171871400-171878800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr2:171871400-171878800 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr2:171871400-171879200 Weak transcription Fetal Muscle Trunk muscle
49 chr2:171871400-171879200 Weak transcription Stomach Smooth Muscle stomach
50 chr2:171871400-171882000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015