The 2.0 version of rSNPBase

Variant report

Variant rs1025241
Chromosome Location chr2:171958970-171958971
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:171900400-171975400 Weak transcription Aorta Aorta
2 chr2:171916600-171970800 Weak transcription Ovary ovary
3 chr2:171917000-172000800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr2:171933200-171981000 Weak transcription Rectal Smooth Muscle rectum
5 chr2:171943400-171959600 Weak transcription Left Ventricle heart
6 chr2:171943400-171973800 Weak transcription NH-A brain
7 chr2:171944800-171977400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr2:171949200-171973200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr2:171950600-171972000 Weak transcription H1 Cell Line embryonic stem cell
10 chr2:171950600-171991200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr2:171952800-171959000 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr2:171953400-171959600 ZNF genes & repeats GM12878-XiMat blood
13 chr2:171954400-171970400 Weak transcription Hela-S3 cervix
14 chr2:171954600-171973400 Weak transcription Small Intestine intestine
15 chr2:171954600-171987200 Weak transcription Fetal Stomach stomach
16 chr2:171955600-171973200 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr2:171955800-171980800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr2:171956400-171980200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr2:171957000-171959800 Weak transcription Brain Anterior Caudate brain
20 chr2:171957000-171970600 Weak transcription Placenta Placenta
21 chr2:171957000-171972200 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr2:171957000-171975400 Weak transcription Right Ventricle heart
23 chr2:171957200-171959000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr2:171957200-171959200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr2:171957200-171959200 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr2:171957200-171959200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr2:171957200-171959600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr2:171957200-171959600 Weak transcription Primary T cells fromperipheralblood blood
29 chr2:171957200-171963400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr2:171957200-171963400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr2:171957200-171963600 Weak transcription Fetal Intestine Large intestine
32 chr2:171957200-171965800 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr2:171957200-171966400 Weak transcription Psoas Muscle Psoas
34 chr2:171957200-171966800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr2:171957200-171967000 Weak transcription Fetal Thymus thymus
36 chr2:171957200-171967800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr2:171957200-171967800 Weak transcription Fetal Intestine Small intestine
38 chr2:171957200-171968200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr2:171957200-171970800 Weak transcription Primary B cells from cord blood blood
40 chr2:171957200-171970800 Weak transcription Liver Liver
41 chr2:171957200-171972000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr2:171957200-171972600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr2:171957200-171973400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr2:171957200-171973800 Weak transcription Esophagus oesophagus
45 chr2:171957200-171975800 Weak transcription Fetal Lung lung
46 chr2:171957200-171976200 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr2:171957200-171977800 Weak transcription Thymus Thymus
48 chr2:171957200-171978000 Weak transcription NHEK skin
49 chr2:171957200-171980000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr2:171957200-171980000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015