Variant report

Variant	rs10177560
Chromosome Location	chr2:172013729-172013730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr2:172013722-172014543	K562	blood:	n/a	n/a
2	NFATC1	chr2:172012164-172014954	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:171929849..171932230-chr2:172012794..172015228,2	MCF-7	breast:
2	chr2:172013226..172020125-chr2:172287594..172292844,18	MCF-7	breast:
3	chr2:172012919..172015830-chr2:172294656..172296953,2	K562	blood:
4	chr2:170655317..170656996-chr2:172011649..172014021,2	MCF-7	breast:
5	chr2:171980164..171981801-chr2:172013211..172015839,2	K562	blood:
6	chr2:172002500..172008778-chr2:172012564..172018500,9	MCF-7	breast:

No data

Variant related genes	Relation type
TLK1	TF binding region
ENSG00000138385	Chromatin interaction
ENSG00000123600	Chromatin interaction
ENSG00000115827	Chromatin interaction
ENSG00000238567	Chromatin interaction

Extended variants
information (count: 200 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:199)

rs_ID	r²[population]
rs10171850	0.96[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs10182205	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10182207	0.96[ASN][1000 genomes]
rs10183486	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10183909	0.90[EUR][1000 genomes]
rs10186343	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10189480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10191270	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10193992	0.96[ASN][1000 genomes]
rs10197081	0.96[ASN][1000 genomes]
rs10198197	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199500	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10204062	0.86[EUR][1000 genomes]
rs10206289	0.96[ASN][1000 genomes]
rs10207361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10208271	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10208341	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10210693	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10210791	0.93[ASW][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10210883	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1025240	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1025241	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1025242	0.87[ASN][1000 genomes]
rs1035825	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1035826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1035827	0.81[CEU][hapmap];0.92[TSI][hapmap]
rs1035828	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1045327	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10803855	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10930453	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10930455	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10930456	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10930457	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11553951	0.96[ASN][1000 genomes]
rs11674590	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11696064	0.95[TSI][hapmap]
rs11899305	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12053543	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12477649	0.92[CEU][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs12614580	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12618898	0.83[CEU][hapmap]
rs12692962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12997252	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs12998296	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13002517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13003218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13004273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13006705	0.89[ASN][1000 genomes]
rs13007415	0.96[ASN][1000 genomes]
rs13008199	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs13010307	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13016705	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13025198	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13026444	0.96[ASN][1000 genomes]
rs13030784	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13034529	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13036123	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13395669	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13401706	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13402107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13403285	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13410683	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs13411575	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13417709	1.00[ASN][1000 genomes]
rs13417864	0.90[ASN][1000 genomes]
rs13419444	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13420171	0.96[ASN][1000 genomes]
rs13425247	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13427723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13428613	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13430489	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13432325	0.96[ASN][1000 genomes]
rs13432813	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1344236	1.00[ASN][1000 genomes]
rs1344237	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529378	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1529391	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs16859142	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17282929	0.93[ASN][1000 genomes]
rs17283147	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1962841	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1978592	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991370	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[ASN][1000 genomes]
rs2010114	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2033160	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052808	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2059724	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2081715	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2114595	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2114596	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2195072	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs2195117	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2217154	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2356593	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2356597	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2356599	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2356607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2356608	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2555922	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2557794	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2676131	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs2676151	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2723233	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2723241	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2723242	0.96[ASN][1000 genomes]
rs28740798	1.00[ASN][1000 genomes]
rs34143031	0.93[ASN][1000 genomes]
rs34303929	0.96[ASN][1000 genomes]
rs34453397	0.96[ASN][1000 genomes]
rs34518725	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34563349	0.87[ASN][1000 genomes]
rs34622740	1.00[ASN][1000 genomes]
rs34792013	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34960296	0.96[ASN][1000 genomes]
rs35047553	0.87[ASN][1000 genomes]
rs35112379	1.00[ASN][1000 genomes]
rs35173138	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35279794	0.83[ASN][1000 genomes]
rs35312173	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35332006	0.96[ASN][1000 genomes]
rs35381957	0.96[ASN][1000 genomes]
rs35900609	0.85[ASN][1000 genomes]
rs35988467	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36058634	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3731991	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755121	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3770423	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3770428	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3770433	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3770435	0.81[EUR][1000 genomes]
rs4564745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667673	0.88[CEU][hapmap]
rs4668354	0.88[CEU][hapmap]
rs4668355	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs4668368	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5028603	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55758155	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55987132	0.87[ASN][1000 genomes]
rs55996750	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56114146	0.85[ASN][1000 genomes]
rs56402728	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56405950	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57236236	0.96[ASN][1000 genomes]
rs6433276	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6710035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6710714	0.84[AMR][1000 genomes]
rs6711287	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6714164	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs6716127	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6719647	0.85[ASN][1000 genomes]
rs6722537	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6730417	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6732229	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6733178	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6734542	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6749427	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6750849	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6754315	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6757510	0.96[ASN][1000 genomes]
rs6758331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6761596	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6761642	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6761759	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6761889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs71415235	0.85[ASN][1000 genomes]
rs719548	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs728455	0.81[EUR][1000 genomes]
rs72886381	0.96[ASN][1000 genomes]
rs73013441	1.00[ASN][1000 genomes]
rs7421377	0.96[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs754058	0.90[TSI][hapmap]
rs7560360	0.81[EUR][1000 genomes]
rs7568083	1.00[ASN][1000 genomes]
rs7578491	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7579424	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7580629	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7581195	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7581314	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7582822	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs7585418	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7585619	1.00[ASN][1000 genomes]
rs7587244	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7593186	0.96[ASN][1000 genomes]
rs7593193	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7594071	0.82[EUR][1000 genomes]
rs7594177	0.96[ASN][1000 genomes]
rs7597940	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7600914	0.85[ASN][1000 genomes]
rs7603316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7603340	0.85[ASN][1000 genomes]
rs7603460	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7603858	0.93[ASN][1000 genomes]
rs7606502	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606822	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs930035	0.92[CEU][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs930036	0.92[CEU][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs958183	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs964172	0.92[CEU][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs9646785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834456	chr2:171874210-172014659	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10177560	TLK1	cis	normal skin	skin_eQTL
rs10177560	TLK1	cis	lesional skin	skin_eQTL
rs10177560	TLK1	Cis_1M	lymphoblastoid	RTeQTL
rs10177560	DLX1	cis	cerebellum	SCAN
rs10177560	TLK1	cis	uninvolved skin	skin_eQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171988200-172014400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:171990000-172016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:171996600-172015400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:171996600-172015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:171996600-172015600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:171998400-172014800	Weak transcription	Brain Anterior Caudate	brain
7	chr2:171999000-172014800	Weak transcription	Osteobl	bone
8	chr2:171999200-172014000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:171999600-172013800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:172000200-172014600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:172003200-172015400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:172003600-172014600	Weak transcription	HMEC	breast
13	chr2:172003800-172014600	Weak transcription	NH-A	brain
14	chr2:172004200-172015400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:172006000-172014600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:172007600-172014800	Weak transcription	Brain Substantia Nigra	brain
17	chr2:172007800-172014200	Enhancers	HepG2	liver
18	chr2:172007800-172014600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:172007800-172015800	Weak transcription	Lung	lung
20	chr2:172008600-172013800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr2:172008800-172014600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:172009000-172014600	Enhancers	Primary T cells from cord blood	blood
23	chr2:172009800-172015200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:172010200-172014800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr2:172010600-172014200	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr2:172010800-172014600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:172010800-172014800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr2:172011000-172014000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:172011000-172014600	Weak transcription	HSMM	muscle
30	chr2:172011200-172014400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:172011200-172014400	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:172011200-172014400	Weak transcription	NHEK	skin
33	chr2:172011200-172014600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr2:172011200-172014600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr2:172011200-172014600	Weak transcription	Fetal Heart	heart
36	chr2:172011200-172014800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:172011200-172014800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:172011200-172014800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:172011200-172015000	Weak transcription	NHLF	lung
40	chr2:172011200-172015200	Weak transcription	Adipose Nuclei	Adipose
41	chr2:172011200-172015200	Weak transcription	Fetal Intestine Small	intestine
42	chr2:172011200-172015400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:172011200-172015400	Weak transcription	Ovary	ovary
44	chr2:172011200-172015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:172011200-172015400	Weak transcription	Stomach Mucosa	stomach
46	chr2:172011200-172015600	Weak transcription	Gastric	stomach
47	chr2:172011400-172013800	Weak transcription	Fetal Intestine Large	intestine
48	chr2:172011400-172014000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr2:172011400-172014400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:172011400-172014600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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