Variant report

Variant	rs13417864
Chromosome Location	chr2:172042739-172042740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172027146..172029899-chr2:172042462..172045335,2	K562	blood:
2	chr2:172037922..172040353-chr2:172040710..172043498,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10177560	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10182205	0.93[ASN][1000 genomes]
rs10182207	0.93[ASN][1000 genomes]
rs10183486	1.00[CHB][hapmap]
rs10189480	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10191270	1.00[CHB][hapmap]
rs10193992	0.93[ASN][1000 genomes]
rs10197081	0.93[ASN][1000 genomes]
rs10198197	1.00[CHB][hapmap]
rs10199500	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs10206289	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10207361	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10208341	1.00[CHB][hapmap]
rs10210693	1.00[CHB][hapmap]
rs10210883	1.00[CHB][hapmap]
rs1025240	1.00[CHB][hapmap]
rs1035825	1.00[CHB][hapmap]
rs1035826	1.00[CHB][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs1035828	1.00[CHB][hapmap]
rs1045327	1.00[CHB][hapmap];0.90[TSI][hapmap]
rs10930453	1.00[CHB][hapmap]
rs10930455	1.00[CHB][hapmap]
rs10930456	1.00[CHB][hapmap]
rs10930457	1.00[CHB][hapmap]
rs11553951	0.86[ASN][1000 genomes]
rs12692962	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12997252	1.00[CHB][hapmap];0.90[TSI][hapmap]
rs12998296	1.00[CHB][hapmap]
rs13002517	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13003218	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13004273	1.00[CHB][hapmap]
rs13007415	0.86[ASN][1000 genomes]
rs13008199	1.00[CHB][hapmap]
rs13010307	1.00[CHB][hapmap]
rs13016705	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13026444	0.86[ASN][1000 genomes]
rs13030784	1.00[CHB][hapmap]
rs13034529	1.00[CHB][hapmap]
rs13036123	1.00[CHB][hapmap]
rs13402107	1.00[CHB][hapmap]
rs13403285	1.00[CHB][hapmap]
rs13411575	1.00[CHB][hapmap]
rs13417709	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13420171	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13425247	1.00[CHB][hapmap]
rs13427723	1.00[CHB][hapmap]
rs13432325	0.93[ASN][1000 genomes]
rs1344236	0.90[ASN][1000 genomes]
rs1344237	1.00[CHB][hapmap]
rs1529378	1.00[CHB][hapmap]
rs17282929	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991370	1.00[CHB][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap]
rs2033160	1.00[CHB][hapmap]
rs2052808	1.00[CHB][hapmap]
rs2081715	1.00[CHB][hapmap]
rs218308	0.81[ASN][1000 genomes]
rs2195072	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2356607	1.00[CHB][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs2356608	1.00[CHB][hapmap]
rs2555922	1.00[CHB][hapmap]
rs2557794	1.00[CHB][hapmap]
rs2676131	1.00[CHB][hapmap]
rs2676151	1.00[CHB][hapmap]
rs2723241	1.00[CHB][hapmap]
rs2723242	0.86[ASN][1000 genomes]
rs28740798	0.90[ASN][1000 genomes]
rs34143031	0.83[ASN][1000 genomes]
rs34303929	0.86[ASN][1000 genomes]
rs34453397	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34622740	0.90[ASN][1000 genomes]
rs34960296	0.86[ASN][1000 genomes]
rs35112379	0.90[ASN][1000 genomes]
rs35332006	0.86[ASN][1000 genomes]
rs35381957	0.86[ASN][1000 genomes]
rs3755121	1.00[CHB][hapmap]
rs3770423	1.00[CHB][hapmap]
rs3770428	1.00[CHB][hapmap]
rs3770433	1.00[CHB][hapmap]
rs4564745	1.00[CHB][hapmap]
rs4668368	1.00[CHB][hapmap]
rs5028603	1.00[CHB][hapmap]
rs57236236	0.86[ASN][1000 genomes]
rs6433276	1.00[CHB][hapmap]
rs6710035	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6714164	1.00[CHB][hapmap]
rs6716127	1.00[CHB][hapmap]
rs6730417	1.00[CHB][hapmap]
rs6733178	1.00[CHB][hapmap]
rs6754315	1.00[CHB][hapmap]
rs6757510	0.86[ASN][1000 genomes]
rs6758331	1.00[CHB][hapmap]
rs6761642	1.00[CHB][hapmap]
rs6761759	1.00[CHB][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs6761889	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs719548	1.00[CHB][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72886381	0.86[ASN][1000 genomes]
rs73013441	0.90[ASN][1000 genomes]
rs7568083	0.90[ASN][1000 genomes]
rs7579424	1.00[CHB][hapmap];0.90[TSI][hapmap];0.93[ASN][1000 genomes]
rs7580629	1.00[CHB][hapmap]
rs7585619	0.90[ASN][1000 genomes]
rs7587244	1.00[CHB][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs7593186	0.86[ASN][1000 genomes]
rs7593193	1.00[CHB][hapmap]
rs7594177	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7603316	1.00[CHB][hapmap]
rs7603858	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606502	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs7606822	1.00[CHB][hapmap]
rs9646785	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172041600-172043000	Bivalent Enhancer	HepG2	liver
2	chr2:172041600-172043000	Enhancers	HSMMtube	muscle
3	chr2:172041800-172043000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:172041800-172043000	Enhancers	Rectal Smooth Muscle	rectum
5	chr2:172041800-172043200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:172041800-172043200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:172041800-172043200	Enhancers	A549	lung
8	chr2:172041800-172043200	Enhancers	NH-A	brain
9	chr2:172041800-172043400	Enhancers	Colon Smooth Muscle	Colon
10	chr2:172041800-172044000	Enhancers	NHLF	lung
11	chr2:172042000-172043000	Enhancers	Ovary	ovary
12	chr2:172042000-172043000	Enhancers	HSMM	muscle
13	chr2:172042000-172043000	Enhancers	K562	blood
14	chr2:172042000-172043200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:172042000-172043200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:172042000-172043200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:172042200-172043000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr2:172042200-172043000	Enhancers	NHEK	skin
19	chr2:172042200-172043000	Flanking Active TSS	Osteobl	bone
20	chr2:172042400-172042800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:172042400-172042800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:172042600-172043000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:172042600-172043000	Enhancers	Aorta	Aorta
24	chr2:172042600-172043000	Flanking Active TSS	NHDF-Ad	bronchial

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