Variant report

Variant rs719548
Chromosome Location chr2:172015052-172015053
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:171990000-172016000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr2:171996600-172015400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr2:171996600-172015400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr2:171996600-172015600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr2:172003200-172015400 Enhancers Primary T helper naive cells fromperipheralblood blood
6 chr2:172004200-172015400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr2:172007800-172015800 Weak transcription Lung lung
8 chr2:172009800-172015200 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr2:172011200-172015200 Weak transcription Adipose Nuclei Adipose
10 chr2:172011200-172015200 Weak transcription Fetal Intestine Small intestine
11 chr2:172011200-172015400 Weak transcription H9 Cell Line embryonic stem cell
12 chr2:172011200-172015400 Weak transcription Ovary ovary
13 chr2:172011200-172015400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr2:172011200-172015400 Weak transcription Stomach Mucosa stomach
15 chr2:172011200-172015600 Weak transcription Gastric stomach
16 chr2:172011400-172015400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr2:172012000-172015200 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr2:172013600-172015400 Weak transcription Left Ventricle heart
19 chr2:172013800-172015200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
20 chr2:172013800-172015800 Flanking Active TSS Dnd41 blood
21 chr2:172013800-172018200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
22 chr2:172013800-172018200 Active TSS GM12878-XiMat blood
23 chr2:172014000-172015200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr2:172014000-172015400 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr2:172014000-172015400 Weak transcription Small Intestine intestine
26 chr2:172014000-172018200 Active TSS K562 blood
27 chr2:172014000-172018800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:172014200-172015200 Flanking Active TSS HUES64 Cell Line embryonic stem cell
29 chr2:172014200-172018600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr2:172014400-172015200 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr2:172014400-172015200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
32 chr2:172014400-172015200 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
33 chr2:172014400-172015400 Enhancers Primary B cells from peripheral blood blood
34 chr2:172014400-172015800 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
35 chr2:172014400-172016200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr2:172014400-172018200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
37 chr2:172014400-172018200 Active TSS HSMMtube muscle
38 chr2:172014600-172015200 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
39 chr2:172014600-172015200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
40 chr2:172014600-172015200 Enhancers Primary mononuclear cells fromperipheralblood Blood
41 chr2:172014600-172015200 Enhancers Fetal Lung lung
42 chr2:172014600-172015200 Flanking Active TSS A549 lung
43 chr2:172014600-172015400 Enhancers Primary monocytes fromperipheralblood blood
44 chr2:172014600-172015400 Enhancers Aorta Aorta
45 chr2:172014600-172015400 Flanking Active TSS NHEK skin
46 chr2:172014600-172015600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr2:172014600-172015600 Flanking Active TSS Fetal Brain Female brain
48 chr2:172014600-172015800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr2:172014600-172015800 Flanking Active TSS Primary T cells from cord blood blood
50 chr2:172014600-172015800 Flanking Active TSS Primary T helper cells fromperipheralblood blood

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