The 2.0 version of rSNPBase

Variant report

Variant rs71415235
Chromosome Location chr2:171894122-171894123
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:171830600-171902800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:171831400-171916200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr2:171841000-171895800 Weak transcription H9 Cell Line embryonic stem cell
4 chr2:171841600-171940000 Weak transcription Right Ventricle heart
5 chr2:171842600-171912000 Weak transcription Placenta Amnion Placenta Amnion
6 chr2:171846000-171898000 Weak transcription Psoas Muscle Psoas
7 chr2:171846200-171901000 Weak transcription Fetal Brain Male brain
8 chr2:171847400-171902600 Weak transcription Brain Angular Gyrus brain
9 chr2:171853200-171898800 Weak transcription Aorta Aorta
10 chr2:171859600-171897000 Weak transcription Esophagus oesophagus
11 chr2:171862600-171918400 Weak transcription Brain Germinal Matrix brain
12 chr2:171862800-171899000 Weak transcription Brain Cingulate Gyrus brain
13 chr2:171862800-171931200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr2:171863200-171896200 Weak transcription Hela-S3 cervix
15 chr2:171865800-171905000 Weak transcription Fetal Heart heart
16 chr2:171867800-171898600 Weak transcription Rectal Smooth Muscle rectum
17 chr2:171867800-171898800 Weak transcription Colonic Mucosa Colon
18 chr2:171867800-171916200 Weak transcription Gastric stomach
19 chr2:171871200-171897800 Weak transcription Pancreas Pancrea
20 chr2:171871400-171898000 Weak transcription Lung lung
21 chr2:171874800-171916200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:171878000-171943200 Weak transcription Small Intestine intestine
23 chr2:171878800-171940000 Weak transcription Stomach Mucosa stomach
24 chr2:171879800-171894200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr2:171881800-171899000 Strong transcription Dnd41 blood
26 chr2:171882400-171900800 Weak transcription NH-A brain
27 chr2:171882600-171902200 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr2:171883200-171897200 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr2:171883600-171895200 Strong transcription Fetal Thymus thymus
30 chr2:171883600-171916200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr2:171884200-171913000 Strong transcription Liver Liver
32 chr2:171885600-171902800 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr2:171886000-171902200 Strong transcription iPS-20b Cell Line embryonic stem cell
34 chr2:171887400-171903200 Strong transcription Primary hematopoietic stem cells blood
35 chr2:171888200-171913800 Strong transcription HepG2 liver
36 chr2:171889000-171897800 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr2:171890400-171901400 Strong transcription HUES48 Cell Line embryonic stem cell
38 chr2:171890400-171912800 Strong transcription Placenta Placenta
39 chr2:171890400-171917600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr2:171890600-171902200 Strong transcription iPS-18 Cell Line embryonic stem cell
41 chr2:171890800-171894400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr2:171891000-171894400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr2:171891000-171896400 Strong transcription Primary T cells fromperipheralblood blood
44 chr2:171891000-171913400 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr2:171891400-171911600 Strong transcription Rectal Mucosa Donor 29 rectum
46 chr2:171891800-171894800 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr2:171892000-171894400 ZNF genes & repeats GM12878-XiMat blood
48 chr2:171892000-171894600 Strong transcription Osteobl bone
49 chr2:171892000-171894800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr2:171892000-171904000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015