Variant report

Variant	rs13420171
Chromosome Location	chr2:172031488-172031489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172014648..172020132-chr2:172028614..172032325,6	K562	blood:
2	chr2:172016624..172018915-chr2:172029736..172031664,2	MCF-7	breast:
3	chr2:172025125..172028095-chr2:172031159..172032971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 158 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10167878	0.89[AFR][1000 genomes]
rs10177560	0.96[ASN][1000 genomes]
rs10182205	0.93[ASN][1000 genomes]
rs10182207	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10183486	0.84[ASN][1000 genomes]
rs10186343	0.81[ASN][1000 genomes]
rs10189480	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193992	0.93[ASN][1000 genomes]
rs10197081	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10198197	0.84[ASN][1000 genomes]
rs10199500	0.93[ASN][1000 genomes]
rs10206289	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207361	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10208271	0.84[ASN][1000 genomes]
rs10208341	0.84[ASN][1000 genomes]
rs10210693	0.84[ASN][1000 genomes]
rs10210791	0.84[ASN][1000 genomes]
rs10210883	0.81[ASN][1000 genomes]
rs1025240	0.84[ASN][1000 genomes]
rs1025241	0.84[ASN][1000 genomes]
rs1025242	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1035825	0.84[ASN][1000 genomes]
rs1035826	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1035828	0.81[ASN][1000 genomes]
rs10803855	0.81[ASN][1000 genomes]
rs10930453	0.81[ASN][1000 genomes]
rs10930455	0.81[ASN][1000 genomes]
rs10930456	0.81[ASN][1000 genomes]
rs10930457	0.81[ASN][1000 genomes]
rs11553951	0.93[ASN][1000 genomes]
rs11674590	0.81[ASN][1000 genomes]
rs11899305	0.81[ASN][1000 genomes]
rs12692962	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12997252	0.81[ASN][1000 genomes]
rs12998296	0.81[ASN][1000 genomes]
rs13002517	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13003218	0.93[ASN][1000 genomes]
rs13004273	0.81[ASN][1000 genomes]
rs13006705	0.86[ASN][1000 genomes]
rs13007415	0.93[ASN][1000 genomes]
rs13010307	0.81[ASN][1000 genomes]
rs13016705	0.90[ASN][1000 genomes]
rs13025198	0.81[ASN][1000 genomes]
rs13026444	0.93[ASN][1000 genomes]
rs13030784	0.81[ASN][1000 genomes]
rs13034529	0.84[ASN][1000 genomes]
rs13395669	0.84[ASN][1000 genomes]
rs13401706	0.84[ASN][1000 genomes]
rs13402107	0.84[ASN][1000 genomes]
rs13403285	0.84[ASN][1000 genomes]
rs13411575	0.81[ASN][1000 genomes]
rs13417709	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13417864	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13419444	0.84[ASN][1000 genomes]
rs13425247	0.81[ASN][1000 genomes]
rs13427723	0.84[ASN][1000 genomes]
rs13428613	0.84[ASN][1000 genomes]
rs13430489	0.81[ASN][1000 genomes]
rs13432325	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13432813	0.84[ASN][1000 genomes]
rs1344236	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529378	0.81[ASN][1000 genomes]
rs16859142	0.81[ASN][1000 genomes]
rs17282929	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17283147	0.81[ASN][1000 genomes]
rs1962841	0.81[ASN][1000 genomes]
rs1978592	0.81[ASN][1000 genomes]
rs1991370	0.81[ASN][1000 genomes]
rs2033160	0.81[ASN][1000 genomes]
rs2052808	0.81[ASN][1000 genomes]
rs2081715	0.84[ASN][1000 genomes]
rs2114595	0.81[ASN][1000 genomes]
rs2114596	0.84[ASN][1000 genomes]
rs218308	0.80[ASN][1000 genomes]
rs2195072	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2195117	0.81[ASN][1000 genomes]
rs2217154	0.84[ASN][1000 genomes]
rs2356597	0.81[ASN][1000 genomes]
rs2356607	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2356608	0.84[ASN][1000 genomes]
rs2557794	0.81[ASN][1000 genomes]
rs2676131	0.81[ASN][1000 genomes]
rs2676151	0.81[ASN][1000 genomes]
rs2723233	0.81[ASN][1000 genomes]
rs2723241	0.81[ASN][1000 genomes]
rs2723242	0.93[ASN][1000 genomes]
rs28740798	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34143031	0.90[ASN][1000 genomes]
rs34303929	0.93[ASN][1000 genomes]
rs34453397	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34518725	0.81[ASN][1000 genomes]
rs34563349	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34622740	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34792013	0.81[ASN][1000 genomes]
rs34960296	0.93[ASN][1000 genomes]
rs35047553	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35112379	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35173138	0.84[ASN][1000 genomes]
rs35312173	0.84[ASN][1000 genomes]
rs35332006	0.93[ASN][1000 genomes]
rs35381957	0.93[ASN][1000 genomes]
rs35900609	0.81[ASN][1000 genomes]
rs35988467	0.84[ASN][1000 genomes]
rs36058634	0.81[ASN][1000 genomes]
rs3731991	0.81[ASN][1000 genomes]
rs3755121	0.84[ASN][1000 genomes]
rs3770423	0.81[ASN][1000 genomes]
rs3770428	0.81[ASN][1000 genomes]
rs4564745	0.81[ASN][1000 genomes]
rs4668368	0.81[ASN][1000 genomes]
rs5028603	0.81[ASN][1000 genomes]
rs55758155	0.84[ASN][1000 genomes]
rs55987132	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55996750	0.81[ASN][1000 genomes]
rs56114146	0.81[ASN][1000 genomes]
rs56402728	0.81[ASN][1000 genomes]
rs56405950	0.84[ASN][1000 genomes]
rs57236236	0.93[ASN][1000 genomes]
rs6433276	0.81[ASN][1000 genomes]
rs6710035	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6716127	0.84[ASN][1000 genomes]
rs6719647	0.81[ASN][1000 genomes]
rs6722537	0.81[ASN][1000 genomes]
rs6730417	0.84[ASN][1000 genomes]
rs6732229	0.81[ASN][1000 genomes]
rs6733178	0.81[ASN][1000 genomes]
rs6734542	0.81[ASN][1000 genomes]
rs6750849	0.81[ASN][1000 genomes]
rs6754315	0.84[ASN][1000 genomes]
rs6757510	0.93[ASN][1000 genomes]
rs6761596	0.81[ASN][1000 genomes]
rs6761642	0.81[ASN][1000 genomes]
rs6761759	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6761889	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71415235	0.81[ASN][1000 genomes]
rs719548	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72886381	0.93[ASN][1000 genomes]
rs73013441	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7568083	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7578491	0.81[ASN][1000 genomes]
rs7579424	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7580629	0.81[ASN][1000 genomes]
rs7581195	0.84[ASN][1000 genomes]
rs7585418	0.81[ASN][1000 genomes]
rs7585619	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7587244	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7593186	0.93[ASN][1000 genomes]
rs7593193	0.81[ASN][1000 genomes]
rs7594177	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600914	0.81[ASN][1000 genomes]
rs7603316	0.84[ASN][1000 genomes]
rs7603340	0.81[ASN][1000 genomes]
rs7603460	0.84[ASN][1000 genomes]
rs7603858	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606502	0.93[ASN][1000 genomes]
rs7606822	0.81[ASN][1000 genomes]
rs958183	0.81[ASN][1000 genomes]
rs9646785	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13420171	TLK1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172029200-172031800	Enhancers	Placenta	Placenta
2	chr2:172029800-172031600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:172030000-172031600	Enhancers	NHEK	skin
4	chr2:172030200-172031600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:172030600-172035600	Weak transcription	GM12878-XiMat	blood

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