Variant report

Variant	rs6730417
Chromosome Location	chr2:171968947-171968948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171968241..171970769-chr2:171970992..171972766,2	K562	blood:
2	chr2:171965753..171969194-chr2:172016300..172018400,3	K562	blood:
3	chr2:171967674..171970126-chr2:171994947..171996505,2	K562	blood:
4	chr2:171960970..171963652-chr2:171967257..171969446,2	K562	blood:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 227 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10171850	0.92[CEU][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs10177560	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10182205	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10182207	0.84[ASN][1000 genomes]
rs10183486	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183909	0.80[EUR][1000 genomes]
rs10186343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10189480	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10191270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10193992	0.84[ASN][1000 genomes]
rs10197081	0.84[ASN][1000 genomes]
rs10198197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10206289	0.84[ASN][1000 genomes]
rs10207361	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10208271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210693	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210791	0.93[ASW][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025240	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025241	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025242	1.00[ASN][1000 genomes]
rs1035825	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs1035827	0.85[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1035828	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1045327	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10515934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10803854	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10803855	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10930449	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10930455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11553951	0.84[ASN][1000 genomes]
rs11674590	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11696064	0.81[CEU][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs11899305	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11902369	0.88[CEU][hapmap]
rs12053543	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12477649	0.96[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs12612871	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs12614580	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12618232	0.83[EUR][1000 genomes]
rs12618898	0.87[CEU][hapmap]
rs12624094	0.86[EUR][1000 genomes]
rs12692962	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12988738	0.88[EUR][1000 genomes]
rs12997252	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12998296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13002517	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13003218	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13004273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13007415	0.84[ASN][1000 genomes]
rs13008199	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13010307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13016705	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs13025198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13026444	0.84[ASN][1000 genomes]
rs13026662	0.83[EUR][1000 genomes]
rs13030784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13034529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13036123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13395669	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402107	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13403285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410683	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs13411575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13417709	0.87[ASN][1000 genomes]
rs13419444	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420171	0.84[ASN][1000 genomes]
rs13425247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13427723	1.00[CHB][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428613	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13430489	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13432325	0.84[ASN][1000 genomes]
rs13432813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344236	0.87[ASN][1000 genomes]
rs1344237	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529378	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap]
rs16859050	0.84[CEU][hapmap]
rs16859066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16859081	0.88[EUR][1000 genomes]
rs16859142	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17282929	0.81[ASN][1000 genomes]
rs17283147	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1962841	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1978592	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1991370	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2010114	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2033160	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2059724	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2098999	0.84[CEU][hapmap]
rs2114595	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2114596	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114738	0.81[EUR][1000 genomes]
rs2195072	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs2195116	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2195117	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2217154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356593	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356597	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356599	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs2356608	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555922	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2557794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2557799	0.87[EUR][1000 genomes]
rs2676131	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2676151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2723233	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2723241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2723242	0.84[ASN][1000 genomes]
rs28740798	0.87[ASN][1000 genomes]
rs34004615	0.87[EUR][1000 genomes]
rs34143031	0.81[ASN][1000 genomes]
rs34303929	0.84[ASN][1000 genomes]
rs34453397	0.84[ASN][1000 genomes]
rs34518725	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34563349	1.00[ASN][1000 genomes]
rs34622740	0.87[ASN][1000 genomes]
rs34792013	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34960296	0.84[ASN][1000 genomes]
rs35047553	1.00[ASN][1000 genomes]
rs35112379	0.87[ASN][1000 genomes]
rs35173138	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312173	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35332006	0.84[ASN][1000 genomes]
rs35381957	0.84[ASN][1000 genomes]
rs35900609	0.91[ASN][1000 genomes]
rs35988467	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36058634	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3731990	0.84[EUR][1000 genomes]
rs3731991	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755121	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755124	0.84[CEU][hapmap]
rs3755125	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3755126	0.84[CEU][hapmap]
rs3770423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3770435	0.90[EUR][1000 genomes]
rs3770438	0.88[CEU][hapmap];0.85[TSI][hapmap]
rs3770440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3770442	1.00[CHD][hapmap]
rs4564745	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4667673	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4668343	0.84[CEU][hapmap]
rs4668354	0.92[CEU][hapmap]
rs4668355	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4668368	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5028603	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55758155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987132	1.00[ASN][1000 genomes]
rs55996750	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56114146	0.91[ASN][1000 genomes]
rs56402728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56405950	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57236236	0.84[ASN][1000 genomes]
rs6433276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6710035	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6710714	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6711287	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6714164	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs6715332	0.88[EUR][1000 genomes]
rs6716127	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719647	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6722537	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6732229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6733178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6734542	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6734903	0.88[EUR][1000 genomes]
rs6742797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6742854	0.85[EUR][1000 genomes]
rs6743201	0.88[EUR][1000 genomes]
rs6749427	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6750849	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6754315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757510	0.84[ASN][1000 genomes]
rs6758331	1.00[CHB][hapmap]
rs6761596	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6761642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6761759	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs6761889	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs71415235	0.91[ASN][1000 genomes]
rs719548	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs72886381	0.84[ASN][1000 genomes]
rs73013441	0.87[ASN][1000 genomes]
rs731692	1.00[CHB][hapmap]
rs731693	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7421377	0.92[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs754058	0.90[TSI][hapmap]
rs7568083	0.87[ASN][1000 genomes]
rs7578491	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7579424	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs7580629	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7581195	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581314	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7582822	0.90[TSI][hapmap]
rs7585418	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7585619	0.87[ASN][1000 genomes]
rs7587244	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs7593186	0.84[ASN][1000 genomes]
rs7593193	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7594177	0.84[ASN][1000 genomes]
rs7597940	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7600914	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7603316	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603340	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7603460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603858	0.81[ASN][1000 genomes]
rs7606502	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7606822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs930035	0.96[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs930036	0.96[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs958183	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs960222	0.87[EUR][1000 genomes]
rs964172	0.96[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs9646785	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs965518	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834456	chr2:171874210-172014659	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6730417	DLX1	cis	cerebellum	SCAN
rs6730417	TLK1	cis	uninvolved skin	skin_eQTL
rs6730417	GORASP2	cis	cerebellum	SCAN
rs6730417	TLK1	cis	lesional skin	skin_eQTL
rs6730417	TLK1	Cis_1M	lymphoblastoid	RTeQTL
rs6730417	TLK1	cis	normal skin	skin_eQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171900400-171975400	Weak transcription	Aorta	Aorta
2	chr2:171916600-171970800	Weak transcription	Ovary	ovary
3	chr2:171917000-172000800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:171933200-171981000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:171943400-171973800	Weak transcription	NH-A	brain
6	chr2:171944800-171977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:171949200-171973200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:171950600-171972000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:171950600-171991200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:171954400-171970400	Weak transcription	Hela-S3	cervix
11	chr2:171954600-171973400	Weak transcription	Small Intestine	intestine
12	chr2:171954600-171987200	Weak transcription	Fetal Stomach	stomach
13	chr2:171955600-171973200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:171955800-171980800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:171956400-171980200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:171957000-171970600	Weak transcription	Placenta	Placenta
17	chr2:171957000-171972200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:171957000-171975400	Weak transcription	Right Ventricle	heart
19	chr2:171957200-171970800	Weak transcription	Primary B cells from cord blood	blood
20	chr2:171957200-171970800	Weak transcription	Liver	Liver
21	chr2:171957200-171972000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:171957200-171972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:171957200-171973400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:171957200-171973800	Weak transcription	Esophagus	oesophagus
25	chr2:171957200-171975800	Weak transcription	Fetal Lung	lung
26	chr2:171957200-171976200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:171957200-171977800	Weak transcription	Thymus	Thymus
28	chr2:171957200-171978000	Weak transcription	NHEK	skin
29	chr2:171957200-171980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:171957200-171980000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:171957200-171982400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:171957200-171986000	Weak transcription	Spleen	Spleen
33	chr2:171957200-172010400	Weak transcription	HSMM	muscle
34	chr2:171957400-171969600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:171957400-171970600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:171957400-171970800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:171957400-171971400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr2:171957400-171972800	Weak transcription	Fetal Muscle Leg	muscle
39	chr2:171957400-171975800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:171957600-171970000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:171957600-171970600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:171957600-171971400	Weak transcription	A549	lung
43	chr2:171957600-171975400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr2:171959600-171975800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr2:171959600-171980000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:171961200-171970800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:171961600-171973200	Weak transcription	Primary T cells from cord blood	blood
48	chr2:171961600-171973400	Weak transcription	Osteobl	bone
49	chr2:171961600-171975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:171962200-171972000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

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