Variant report

Variant	rs13004273
Chromosome Location	chr2:171871997-171871998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171869112..171873256-chr2:171875582..171877821,4	K562	blood:
2	chr2:171828900..171831418-chr2:171870207..171872627,2	MCF-7	breast:

Extended variants
information (count: 230 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:229)

rs_ID	r²[population]
rs10171850	0.92[CEU][hapmap];0.97[TSI][hapmap]
rs10177560	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10182205	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10182207	0.81[ASN][1000 genomes]
rs10183486	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10186343	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189480	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10191270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10193992	0.81[ASN][1000 genomes]
rs10197081	0.81[ASN][1000 genomes]
rs10198197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10199500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10206289	0.81[ASN][1000 genomes]
rs10207361	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10208271	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10208341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210693	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210791	0.80[GIH][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025240	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025241	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025242	0.91[ASN][1000 genomes]
rs1035825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1035826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs1035827	0.85[CEU][hapmap];0.92[TSI][hapmap]
rs1035828	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045327	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs10515934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10803854	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10803855	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930449	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11553951	0.88[ASN][1000 genomes]
rs11674590	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696064	0.81[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs11899305	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902369	0.88[CEU][hapmap]
rs12053543	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12477649	0.96[CEU][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs12612871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs12614580	0.92[EUR][1000 genomes]
rs12618232	0.82[EUR][1000 genomes]
rs12618898	0.87[CEU][hapmap]
rs12624094	0.85[EUR][1000 genomes]
rs12692962	1.00[CHB][hapmap]
rs12988738	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12997252	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12998296	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13002517	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs13003218	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs13006705	0.81[ASN][1000 genomes]
rs13007415	0.88[ASN][1000 genomes]
rs13008199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs13010307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13016705	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs13025198	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13026444	0.88[ASN][1000 genomes]
rs13026662	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13030784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13034529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13036123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13395669	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13401706	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13402107	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13403285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13410683	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13411575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13417709	0.85[ASN][1000 genomes]
rs13419444	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13420171	0.81[ASN][1000 genomes]
rs13425247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13427723	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13428613	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13430489	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13432325	0.81[ASN][1000 genomes]
rs13432813	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1344236	0.85[ASN][1000 genomes]
rs1344237	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1529378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs16859050	0.84[CEU][hapmap]
rs16859066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16859081	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16859142	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859177	0.81[LWK][hapmap]
rs17283147	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962841	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978592	1.00[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991370	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2010114	0.85[EUR][1000 genomes]
rs2033160	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059724	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2098999	0.84[CEU][hapmap]
rs2114595	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114596	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2114738	0.85[EUR][1000 genomes]
rs2195072	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs2195116	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2195117	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217154	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356423	0.84[EUR][1000 genomes]
rs2356593	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356599	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs2356608	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2555922	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2557794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2557799	0.95[EUR][1000 genomes]
rs2676131	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723233	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723241	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2723242	0.88[ASN][1000 genomes]
rs28740798	0.85[ASN][1000 genomes]
rs34004615	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34017170	0.88[ASN][1000 genomes]
rs34143031	0.85[ASN][1000 genomes]
rs34303929	0.88[ASN][1000 genomes]
rs34453397	0.81[ASN][1000 genomes]
rs34518725	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34563349	0.91[ASN][1000 genomes]
rs34622740	0.85[ASN][1000 genomes]
rs34792013	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960296	0.88[ASN][1000 genomes]
rs35047553	0.91[ASN][1000 genomes]
rs35112379	0.85[ASN][1000 genomes]
rs35173138	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35312173	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35332006	0.88[ASN][1000 genomes]
rs35381957	0.88[ASN][1000 genomes]
rs35864840	0.88[ASN][1000 genomes]
rs35900609	1.00[ASN][1000 genomes]
rs35988467	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36058634	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731990	0.83[EUR][1000 genomes]
rs3731991	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755124	0.84[CEU][hapmap]
rs3755125	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3755126	0.84[CEU][hapmap]
rs3770423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770435	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3770438	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs3770440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3770442	1.00[CHD][hapmap]
rs4544401	0.87[EUR][1000 genomes]
rs4564745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4667673	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs4668343	0.84[CEU][hapmap]
rs4668354	0.92[CEU][hapmap]
rs4668355	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4668368	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028603	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758155	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55987132	0.91[ASN][1000 genomes]
rs55996750	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56114146	1.00[ASN][1000 genomes]
rs56402728	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56405950	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57236236	0.88[ASN][1000 genomes]
rs6433276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709077	0.88[ASN][1000 genomes]
rs6710035	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6711287	0.86[EUR][1000 genomes]
rs6714164	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6715332	0.95[EUR][1000 genomes]
rs6716127	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6719647	1.00[ASN][1000 genomes]
rs6722537	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6732229	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6733178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6734542	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734903	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6742797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6742854	0.81[EUR][1000 genomes]
rs6743201	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6749427	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6750849	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6757510	0.88[ASN][1000 genomes]
rs6758331	1.00[CHB][hapmap]
rs6761596	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761759	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.88[ASN][1000 genomes]
rs6761889	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs71415235	1.00[ASN][1000 genomes]
rs719548	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs72886381	0.88[ASN][1000 genomes]
rs73013441	0.85[ASN][1000 genomes]
rs731692	1.00[CHB][hapmap]
rs731693	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7421377	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs754058	0.90[TSI][hapmap]
rs7568083	0.85[ASN][1000 genomes]
rs7578491	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7579424	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[ASN][1000 genomes]
rs7580629	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581195	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7581314	0.86[EUR][1000 genomes]
rs7582822	0.90[TSI][hapmap]
rs7585418	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585619	0.85[ASN][1000 genomes]
rs7587244	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs7593186	0.88[ASN][1000 genomes]
rs7593193	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594177	0.81[ASN][1000 genomes]
rs7597940	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7600914	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603316	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7603340	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603460	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7606502	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7606822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930035	0.96[CEU][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs930036	0.96[CEU][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs958183	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs960222	0.94[EUR][1000 genomes]
rs964172	0.96[CEU][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9646785	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs965518	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13004273	TLK1	cis	lesional skin	skin_eQTL
rs13004273	TLK1	cis	normal skin	skin_eQTL
rs13004273	TLK1	Cis_1M	lymphoblastoid	RTeQTL
rs13004273	TLK1	cis	uninvolved skin	skin_eQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171830600-171902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:171830800-171891400	Weak transcription	Spleen	Spleen
3	chr2:171831400-171879200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:171831400-171916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:171840800-171879200	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:171841000-171877800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:171841000-171895800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:171841600-171940000	Weak transcription	Right Ventricle	heart
9	chr2:171842200-171892000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:171842600-171912000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:171843000-171877400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:171844800-171873000	Strong transcription	GM12878-XiMat	blood
13	chr2:171846000-171898000	Weak transcription	Psoas Muscle	Psoas
14	chr2:171846200-171901000	Weak transcription	Fetal Brain Male	brain
15	chr2:171847400-171902600	Weak transcription	Brain Angular Gyrus	brain
16	chr2:171847600-171872000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:171847600-171872000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:171847800-171878200	Weak transcription	Stomach Mucosa	stomach
19	chr2:171848800-171873000	Strong transcription	HepG2	liver
20	chr2:171850400-171892000	Weak transcription	Brain Anterior Caudate	brain
21	chr2:171851800-171881800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr2:171853200-171898800	Weak transcription	Aorta	Aorta
23	chr2:171854000-171877400	Weak transcription	NHLF	lung
24	chr2:171858000-171891800	Weak transcription	Fetal Brain Female	brain
25	chr2:171858000-171892000	Weak transcription	Brain Substantia Nigra	brain
26	chr2:171859400-171892000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:171859600-171872400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:171859600-171876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:171859600-171897000	Weak transcription	Esophagus	oesophagus
30	chr2:171860000-171876400	Weak transcription	Fetal Stomach	stomach
31	chr2:171861600-171877400	Weak transcription	A549	lung
32	chr2:171862200-171874600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:171862200-171877400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:171862200-171890600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr2:171862600-171918400	Weak transcription	Brain Germinal Matrix	brain
36	chr2:171862800-171878600	Weak transcription	HSMMtube	muscle
37	chr2:171862800-171879400	Weak transcription	Thymus	Thymus
38	chr2:171862800-171885400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:171862800-171885800	Weak transcription	Ovary	ovary
40	chr2:171862800-171899000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr2:171862800-171931200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:171863200-171877400	Weak transcription	NHDF-Ad	bronchial
43	chr2:171863200-171877800	Weak transcription	HUVEC	blood vessel
44	chr2:171863200-171886200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:171863200-171896200	Weak transcription	Hela-S3	cervix
46	chr2:171864200-171878600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr2:171864600-171876200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:171865200-171872000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr2:171865200-171872000	Strong transcription	Fetal Thymus	thymus
50	chr2:171865800-171905000	Weak transcription	Fetal Heart	heart

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