Variant report

Variant	rs35242294
Chromosome Location	chr6:56710929-56710930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10498812	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10498813	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11756551	0.84[EUR][1000 genomes]
rs13190854	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13192540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13192931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13194625	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13194904	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13195601	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13198204	0.88[EUR][1000 genomes]
rs13198597	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13200166	0.88[EUR][1000 genomes]
rs13200559	0.82[EUR][1000 genomes]
rs13200768	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13200868	0.80[EUR][1000 genomes]
rs13201639	0.88[EUR][1000 genomes]
rs13201733	0.88[EUR][1000 genomes]
rs13203148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13203327	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13203681	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13204466	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13205667	0.82[EUR][1000 genomes]
rs13207768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211879	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13214893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13215883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13218913	0.88[EUR][1000 genomes]
rs13220618	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13220628	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13220851	0.89[EUR][1000 genomes]
rs1610156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1610157	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888171	0.88[EUR][1000 genomes]
rs16888184	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16888186	0.95[EUR][1000 genomes]
rs16888189	0.80[EUR][1000 genomes]
rs16888192	0.81[EUR][1000 genomes]
rs17684730	0.88[EUR][1000 genomes]
rs17684748	0.88[EUR][1000 genomes]
rs17684772	0.88[EUR][1000 genomes]
rs17684784	0.88[EUR][1000 genomes]
rs17684802	0.88[EUR][1000 genomes]
rs17684878	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17684884	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17684941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17751966	0.88[EUR][1000 genomes]
rs17751977	0.88[EUR][1000 genomes]
rs17752002	0.88[EUR][1000 genomes]
rs17752046	0.88[EUR][1000 genomes]
rs17752106	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17752213	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1903332	0.97[EUR][1000 genomes]
rs28360570	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34083827	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34171958	0.88[EUR][1000 genomes]
rs34228698	0.88[EUR][1000 genomes]
rs34359353	0.88[EUR][1000 genomes]
rs34425815	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34500949	0.82[EUR][1000 genomes]
rs34520435	0.88[EUR][1000 genomes]
rs34612783	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34614087	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34640766	0.88[EUR][1000 genomes]
rs34866877	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34896026	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34966024	0.81[EUR][1000 genomes]
rs35073881	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35080938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35081015	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35225175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35251663	0.87[EUR][1000 genomes]
rs35407078	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35439100	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35440408	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35440822	0.88[EUR][1000 genomes]
rs35461301	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35566812	0.85[EUR][1000 genomes]
rs35609883	0.88[EUR][1000 genomes]
rs35642890	0.88[EUR][1000 genomes]
rs35696739	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35828379	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35851452	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35873865	0.85[EUR][1000 genomes]
rs35886823	0.88[EUR][1000 genomes]
rs36022925	0.88[EUR][1000 genomes]
rs36037734	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs36094082	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4299824	0.88[EUR][1000 genomes]
rs4348308	0.88[EUR][1000 genomes]
rs4371846	0.88[EUR][1000 genomes]
rs4415160	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4457154	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4532444	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4587171	0.85[EUR][1000 genomes]
rs56037312	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56368885	0.81[EUR][1000 genomes]
rs58980183	0.81[EUR][1000 genomes]
rs59432342	0.88[EUR][1000 genomes]
rs61601344	0.88[EUR][1000 genomes]
rs62411366	0.80[EUR][1000 genomes]
rs62411367	0.82[EUR][1000 genomes]
rs62411372	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62411375	0.87[EUR][1000 genomes]
rs62411376	0.88[EUR][1000 genomes]
rs6904535	0.82[EUR][1000 genomes]
rs6905603	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910414	0.96[EUR][1000 genomes]
rs6914293	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918949	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928104	0.80[EUR][1000 genomes]
rs6934714	0.92[EUR][1000 genomes]
rs71564854	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71564855	0.88[EUR][1000 genomes]
rs71564856	0.88[EUR][1000 genomes]
rs71564861	0.88[EUR][1000 genomes]
rs71564863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7758867	0.94[EUR][1000 genomes]
rs7761501	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7761729	1.00[EUR][1000 genomes]
rs7766565	0.95[EUR][1000 genomes]
rs7771085	0.93[EUR][1000 genomes]
rs7775182	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56709200-56711000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:56709200-56711600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:56709200-56712200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:56709200-56712200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:56709200-56712200	Weak transcription	NHLF	lung
6	chr6:56709200-56712600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:56709200-56714000	Weak transcription	Fetal Brain Male	brain
8	chr6:56709200-56714200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:56709200-56714400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:56709200-56714400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:56709200-56714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:56709200-56714600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:56709200-56714600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:56709200-56714600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:56709200-56714600	Weak transcription	Psoas Muscle	Psoas
16	chr6:56709200-56715000	Weak transcription	Thymus	Thymus
17	chr6:56709200-56715400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:56709200-56715400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:56709200-56715400	Weak transcription	Aorta	Aorta
20	chr6:56709200-56716000	Weak transcription	Esophagus	oesophagus
21	chr6:56709400-56711000	Enhancers	Brain Hippocampus Middle	brain
22	chr6:56709400-56711200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:56709400-56711400	Enhancers	A549	lung
24	chr6:56709400-56712200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:56709400-56712200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:56709400-56712400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:56709400-56712400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:56709400-56712800	Weak transcription	Osteobl	bone
29	chr6:56709400-56713000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:56709400-56714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:56709400-56714200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:56709400-56714200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:56709400-56714200	Weak transcription	NH-A	brain
34	chr6:56709400-56714400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:56709400-56714400	Weak transcription	Fetal Brain Female	brain
36	chr6:56709400-56714400	Weak transcription	HSMM	muscle
37	chr6:56709400-56714400	Weak transcription	HUVEC	blood vessel
38	chr6:56709400-56714600	Weak transcription	Adipose Nuclei	Adipose
39	chr6:56709400-56714600	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:56709400-56714800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:56709400-56714800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:56709400-56714800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:56709400-56714800	Weak transcription	HMEC	breast
44	chr6:56709400-56715400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr6:56709400-56716000	Weak transcription	Fetal Thymus	thymus
46	chr6:56709600-56711000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:56709600-56711200	Enhancers	Brain Anterior Caudate	brain
48	chr6:56709600-56712400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:56709600-56715000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:56709800-56711000	Enhancers	Fetal Intestine Small	intestine

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