Variant report

Variant rs17752046
Chromosome Location chr6:56681348-56681349
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56668800-56682600 Weak transcription Aorta Aorta
2 chr6:56674200-56682600 Weak transcription Right Ventricle heart
3 chr6:56674200-56692400 Weak transcription H1 Cell Line embryonic stem cell
4 chr6:56674200-56703000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr6:56674400-56683600 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr6:56674600-56686400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr6:56678400-56681400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr6:56678400-56682600 Enhancers A549 lung
9 chr6:56678600-56681600 Enhancers Fetal Heart heart
10 chr6:56678600-56681800 Enhancers Brain Hippocampus Middle brain
11 chr6:56678800-56681400 Enhancers Osteobl bone
12 chr6:56679000-56681400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr6:56679000-56681600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
14 chr6:56679000-56681600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr6:56679000-56681600 Enhancers Brain Germinal Matrix brain
16 chr6:56679200-56681600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr6:56679200-56681600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr6:56679200-56681600 Enhancers Brain Inferior Temporal Lobe brain
19 chr6:56679200-56681600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
20 chr6:56679200-56687400 Enhancers Brain Substantia Nigra brain
21 chr6:56679600-56682600 Enhancers Brain Cingulate Gyrus brain
22 chr6:56679600-56683800 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr6:56679800-56681600 Enhancers Brain Angular Gyrus brain
24 chr6:56679800-56681600 Enhancers Brain Anterior Caudate brain
25 chr6:56679800-56681600 Enhancers Left Ventricle heart
26 chr6:56679800-56684800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr6:56679800-56693400 Weak transcription Rectal Smooth Muscle rectum
28 chr6:56679800-56693400 Weak transcription NH-A brain
29 chr6:56680000-56681400 Enhancers Skeletal Muscle Male skeletal muscle
30 chr6:56680000-56681600 Enhancers Skeletal Muscle Female skeletal muscle
31 chr6:56680000-56682600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr6:56680000-56684800 Weak transcription Psoas Muscle Psoas
33 chr6:56680000-56685600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr6:56680000-56689000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:56680200-56681400 Enhancers Ovary ovary
36 chr6:56680200-56681800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr6:56680400-56681800 Enhancers HUES48 Cell Line embryonic stem cell
38 chr6:56680600-56684000 Weak transcription ES-WA7 Cell Line embryonic stem cell
39 chr6:56680600-56685800 Weak transcription HSMM muscle
40 chr6:56680600-56686200 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr6:56680600-56690400 Weak transcription HSMMtube muscle
42 chr6:56680800-56681400 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr6:56680800-56681600 Enhancers Right Atrium heart
44 chr6:56680800-56681600 Enhancers NHLF lung
45 chr6:56680800-56683600 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr6:56681000-56681400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr6:56681000-56681400 Enhancers H9 Cell Line embryonic stem cell
48 chr6:56681000-56681400 Enhancers Cortex derived primary cultured neurospheres brain
49 chr6:56681000-56681400 Enhancers Fetal Lung lung
50 chr6:56681000-56681600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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