Variant report

Variant	rs34966024
Chromosome Location	chr6:56631011-56631012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56630082..56632054-chr6:56636880..56638995,2	K562	blood:
2	chr6:56625069..56627235-chr6:56628459..56631328,2	K562	blood:
3	chr6:56610420..56612281-chr6:56629163..56631061,2	MCF-7	breast:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10498812	0.86[EUR][1000 genomes]
rs10498813	0.86[EUR][1000 genomes]
rs11756551	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11970648	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13190784	0.87[ASN][1000 genomes]
rs13190854	0.86[EUR][1000 genomes]
rs13191826	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13192540	0.83[EUR][1000 genomes]
rs13192931	0.83[EUR][1000 genomes]
rs13194625	0.86[EUR][1000 genomes]
rs13194904	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13195601	0.86[EUR][1000 genomes]
rs13198204	0.90[EUR][1000 genomes]
rs13198399	0.82[AMR][1000 genomes]
rs13200166	0.89[EUR][1000 genomes]
rs13200559	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13200768	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13200868	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201639	0.90[EUR][1000 genomes]
rs13201733	0.90[EUR][1000 genomes]
rs13203000	0.89[AMR][1000 genomes]
rs13203148	0.86[EUR][1000 genomes]
rs13203327	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13203681	0.83[EUR][1000 genomes]
rs13204466	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13205667	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13207768	0.81[EUR][1000 genomes]
rs13208409	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13211879	0.85[EUR][1000 genomes]
rs13217390	0.89[AMR][1000 genomes]
rs13218913	0.90[EUR][1000 genomes]
rs13219942	0.82[AMR][1000 genomes]
rs13220618	0.86[EUR][1000 genomes]
rs13220628	0.86[EUR][1000 genomes]
rs13220851	0.92[EUR][1000 genomes]
rs1610157	0.81[EUR][1000 genomes]
rs16888171	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16888186	1.00[ASN][1000 genomes]
rs17684730	0.90[EUR][1000 genomes]
rs17684748	0.90[EUR][1000 genomes]
rs17684772	0.90[EUR][1000 genomes]
rs17684784	0.89[EUR][1000 genomes]
rs17684802	0.89[EUR][1000 genomes]
rs17684878	0.83[EUR][1000 genomes]
rs17684884	0.83[EUR][1000 genomes]
rs17751966	0.90[EUR][1000 genomes]
rs17751977	0.90[EUR][1000 genomes]
rs17752002	0.89[EUR][1000 genomes]
rs17752046	0.89[EUR][1000 genomes]
rs17752106	0.83[EUR][1000 genomes]
rs1903332	1.00[ASN][1000 genomes]
rs34171958	0.89[EUR][1000 genomes]
rs34228698	0.93[EUR][1000 genomes]
rs34359353	0.89[EUR][1000 genomes]
rs34425815	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34455199	0.89[AMR][1000 genomes]
rs34465210	0.89[AMR][1000 genomes]
rs34500949	0.97[EUR][1000 genomes]
rs34520435	0.89[EUR][1000 genomes]
rs34566275	0.89[AMR][1000 genomes]
rs34587484	0.89[AMR][1000 genomes]
rs34612783	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34614087	0.86[EUR][1000 genomes]
rs34623351	0.89[AMR][1000 genomes]
rs34640766	0.89[EUR][1000 genomes]
rs34803237	0.89[AMR][1000 genomes]
rs34832779	0.86[AMR][1000 genomes]
rs34866877	0.86[EUR][1000 genomes]
rs34896026	0.86[EUR][1000 genomes]
rs35073881	0.83[EUR][1000 genomes]
rs35080938	0.82[EUR][1000 genomes]
rs35081015	0.86[EUR][1000 genomes]
rs35225175	0.86[EUR][1000 genomes]
rs35242294	0.81[EUR][1000 genomes]
rs35251663	0.89[EUR][1000 genomes]
rs35326806	0.84[AMR][1000 genomes]
rs35407078	0.86[EUR][1000 genomes]
rs35439100	0.86[EUR][1000 genomes]
rs35440408	1.00[ASN][1000 genomes]
rs35440822	0.89[EUR][1000 genomes]
rs35461301	0.86[EUR][1000 genomes]
rs35494794	0.84[AMR][1000 genomes]
rs35566812	0.94[EUR][1000 genomes]
rs35609883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35642890	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35696739	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35828379	0.82[EUR][1000 genomes]
rs35851452	0.86[EUR][1000 genomes]
rs35873865	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35876418	0.89[AMR][1000 genomes]
rs35886823	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35986172	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36022925	0.89[EUR][1000 genomes]
rs36037734	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36094082	0.83[EUR][1000 genomes]
rs41267675	0.84[AMR][1000 genomes]
rs4299824	0.89[EUR][1000 genomes]
rs4348308	0.89[EUR][1000 genomes]
rs4371846	0.90[EUR][1000 genomes]
rs4415160	0.85[EUR][1000 genomes]
rs4457154	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4532444	0.86[EUR][1000 genomes]
rs4587171	0.87[EUR][1000 genomes]
rs56368885	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58980183	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59432342	0.93[EUR][1000 genomes]
rs60163288	1.00[ASN][1000 genomes]
rs61601344	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411366	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62411367	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62411372	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62411375	0.92[EUR][1000 genomes]
rs62411376	0.93[EUR][1000 genomes]
rs6904535	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905603	0.81[EUR][1000 genomes]
rs6905658	0.87[ASN][1000 genomes]
rs6910414	1.00[ASN][1000 genomes]
rs6914293	0.81[EUR][1000 genomes]
rs6918949	0.81[EUR][1000 genomes]
rs6925518	0.87[ASN][1000 genomes]
rs6926742	0.87[ASN][1000 genomes]
rs6928104	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6934714	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71564854	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71564855	0.89[EUR][1000 genomes]
rs71564856	0.90[EUR][1000 genomes]
rs71564861	0.90[EUR][1000 genomes]
rs71564863	0.83[EUR][1000 genomes]
rs7758867	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761501	0.83[EUR][1000 genomes]
rs7761729	0.81[EUR][1000 genomes]
rs7771085	0.88[EUR][1000 genomes]
rs7775182	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56621400-56634200	Weak transcription	Spleen	Spleen
2	chr6:56622400-56637600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:56623600-56637200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:56623600-56637600	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:56625200-56637800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:56625400-56631400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:56625600-56637000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:56625600-56649800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:56625800-56637000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:56626400-56631200	Weak transcription	HMEC	breast
11	chr6:56626400-56631200	Weak transcription	NHEK	skin
12	chr6:56626400-56637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:56626600-56636000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:56627200-56637400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:56627800-56633000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:56627800-56633400	Enhancers	Colon Smooth Muscle	Colon
17	chr6:56628200-56631600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:56628200-56638400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:56628400-56633000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:56628400-56638400	Enhancers	Osteobl	bone
21	chr6:56628600-56631400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr6:56628600-56632000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr6:56628600-56632000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:56628600-56632000	Enhancers	Fetal Heart	heart
25	chr6:56628600-56633200	Enhancers	Brain Hippocampus Middle	brain
26	chr6:56628600-56634400	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:56628600-56638200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:56628600-56638400	Enhancers	HSMM	muscle
29	chr6:56628800-56632800	Enhancers	NHDF-Ad	bronchial
30	chr6:56629000-56631800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:56629200-56637600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:56629400-56631200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:56629400-56632600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:56629400-56634200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:56629400-56634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:56629400-56637000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:56629400-56637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:56629400-56637600	Weak transcription	Aorta	Aorta
39	chr6:56629400-56640400	Weak transcription	Adipose Nuclei	Adipose
40	chr6:56629600-56631200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr6:56629600-56631600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:56629600-56632600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:56629600-56637600	Weak transcription	Ovary	ovary
44	chr6:56629800-56631200	Weak transcription	Psoas Muscle	Psoas
45	chr6:56629800-56631400	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:56629800-56633000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:56630000-56631200	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:56630000-56631600	Enhancers	Brain Substantia Nigra	brain
49	chr6:56630000-56631800	Enhancers	Brain Angular Gyrus	brain
50	chr6:56630000-56632800	Enhancers	NHLF	lung

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