Variant report

Variant	rs35786047
Chromosome Location	chr10:39105930-39105931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10218851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10218941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10437558	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11146687	1.00[AMR][1000 genomes]
rs11146760	1.00[AMR][1000 genomes]
rs11499297	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11499337	0.87[AFR][1000 genomes]
rs11499340	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11499346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11499452	1.00[EUR][1000 genomes]
rs11499453	1.00[EUR][1000 genomes]
rs12240496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240553	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12243517	1.00[EUR][1000 genomes]
rs12243528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246416	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252128	1.00[AMR][1000 genomes]
rs12252325	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12253710	1.00[AMR][1000 genomes]
rs12253778	1.00[EUR][1000 genomes]
rs12255529	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12259765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12261737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263265	0.83[EUR][1000 genomes]
rs12263276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268567	0.83[EUR][1000 genomes]
rs12269581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12762807	1.00[EUR][1000 genomes]
rs12765059	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12766999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12770407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12771385	1.00[AMR][1000 genomes]
rs12771848	1.00[AMR][1000 genomes]
rs12772691	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12773259	1.00[AMR][1000 genomes]
rs12774539	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12775236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12780512	0.83[EUR][1000 genomes]
rs12783174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34172298	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34315797	1.00[EUR][1000 genomes]
rs34546032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34568960	1.00[AMR][1000 genomes]
rs34708606	1.00[AMR][1000 genomes]
rs34981982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35270079	0.83[EUR][1000 genomes]
rs35307096	1.00[AMR][1000 genomes]
rs35310151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35780265	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35861004	1.00[EUR][1000 genomes]
rs35877912	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36106238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71500459	1.00[AMR][1000 genomes]
rs71502133	1.00[EUR][1000 genomes]
rs71502134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71502135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71502140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71502155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3422361	chr10:38773902-39120597	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550434	chr10:38778034-39154633	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3424232	chr10:38807904-39121147	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2758214	chr10:38868836-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv550477	chr10:38869176-39154633	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3442702	chr10:38871309-39150949	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv469653	chr10:38943836-39132680	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv482820	chr10:38943836-39132680	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv948283	chr10:39067282-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv550543	chr10:39072549-39148308	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv550544	chr10:39075153-39140425	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv550545	chr10:39075153-39148898	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv550546	chr10:39075153-39154220	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv550547	chr10:39075153-39154633	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3328471	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3343007	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3351317	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3395582	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3432777	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3435778	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv18598	chr10:39075822-39117611	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv18050	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv821087	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv4151	chr10:39079675-39125901	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
27	esv8360	chr10:39082341-39108754	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
28	esv3409539	chr10:39082412-39110672	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
29	esv3368882	chr10:39083316-39106432	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
30	esv3411257	chr10:39083320-39112060	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
31	esv7098	chr10:39086185-39109665	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	nsv550548	chr10:39088829-39124438	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
33	nsv550549	chr10:39088829-39127278	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
34	nsv550550	chr10:39088829-39130104	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
35	nsv550551	chr10:39088829-39148308	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
36	nsv550552	chr10:39088829-39154220	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv550553	chr10:39088829-39154633	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	esv9671	chr10:39094316-39111113	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
39	esv3499881	chr10:39095094-39108008	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
40	esv3499882	chr10:39095094-39108008	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv550554	chr10:39097912-39133033	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
42	nsv550555	chr10:39097912-39136170	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
43	nsv550556	chr10:39097912-39140425	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
44	nsv550557	chr10:39097912-39148898	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
45	nsv550558	chr10:39097912-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	esv7561	chr10:39099411-39111308	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
47	esv4872	chr10:39099443-39154855	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	esv3426349	chr10:39101242-39110154	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
49	esv7657	chr10:39101292-39111309	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
50	esv3528098	chr10:39101433-39107830	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
3	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
6	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
8	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
22	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
26	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
27	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
28	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
33	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
34	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:39100400-39113200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
38	chr10:39101200-39117600	ZNF genes & repeats	HepG2	liver
39	chr10:39102600-39121600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:39102800-39111400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:39102800-39113000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
42	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
43	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
45	chr10:39103000-39121600	ZNF genes & repeats	GM12878-XiMat	blood
46	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
47	chr10:39103200-39107400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
48	chr10:39103200-39112800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
49	chr10:39103400-39112000	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr10:39103400-39112800	ZNF genes & repeats	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links