Variant report

Variant	rs3745292
Chromosome Location	chr19:41888506-41888507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41880830..41883046-chr19:41887103..41889706,2	MCF-7	breast:
2	chr19:41883523..41885589-chr19:41888415..41890497,2	K562	blood:

Variant related genes	Relation type
ENSG00000255730	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000248098	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10409485	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10413735	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10416743	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10417311	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10417997	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10420556	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10422783	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10422956	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10432268	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1043413	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1077856	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10853751	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11083618	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11083619	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11667848	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11667908	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11668924	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11670583	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11670668	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11670725	0.86[EUR][1000 genomes]
rs11670757	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11880539	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11883104	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12602	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12709849	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12980966	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13344547	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13344563	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13345590	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13346603	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1473248	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs166925	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16975238	0.83[EUR][1000 genomes]
rs17318596	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17318666	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1967333	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1967334	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2231940	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241706	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241707	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2241708	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2241709	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2241710	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241711	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2288871	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2304242	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2317131	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2569400	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2569754	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284648	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284649	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284650	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284651	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284652	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284654	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284655	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284656	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284657	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284658	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284660	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284661	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284662	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284663	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3213860	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3213861	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3745290	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3786553	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3810174	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3810175	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816037	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3826713	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4605279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4674	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4802116	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4802117	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4802118	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4803461	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803462	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803463	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803465	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803467	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803468	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803469	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55986560	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58961854	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62117461	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62117462	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6508977	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7247332	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7255918	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7258973	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8103531	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8105450	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8105833	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878082	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878083	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs892044	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9304593	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3745292	B3GNT8	cis	Nerve Tibial	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41871200-41888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:41880400-41894000	Weak transcription	HSMMtube	muscle
3	chr19:41882800-41895400	Weak transcription	Psoas Muscle	Psoas
4	chr19:41882800-41895600	Weak transcription	HSMM	muscle
5	chr19:41883000-41890400	Weak transcription	Fetal Lung	lung
6	chr19:41883000-41891200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:41883000-41891800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:41883000-41892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr19:41883000-41895400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr19:41883000-41895600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:41883000-41895600	Weak transcription	Aorta	Aorta
12	chr19:41883000-41896000	Weak transcription	Small Intestine	intestine
13	chr19:41883000-41896000	Weak transcription	HUVEC	blood vessel
14	chr19:41883000-41902800	Weak transcription	Stomach Mucosa	stomach
15	chr19:41883200-41888600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:41883200-41888600	Weak transcription	Brain Angular Gyrus	brain
17	chr19:41883200-41888600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr19:41883200-41888600	Weak transcription	Fetal Intestine Large	intestine
19	chr19:41883200-41888600	Weak transcription	Ovary	ovary
20	chr19:41883200-41889600	Weak transcription	Gastric	stomach
21	chr19:41883200-41890400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr19:41883200-41890400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr19:41883200-41891200	Weak transcription	Liver	Liver
24	chr19:41883200-41891200	Weak transcription	Placenta	Placenta
25	chr19:41883200-41891800	Weak transcription	Pancreas	Pancrea
26	chr19:41883200-41891800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr19:41883200-41892000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:41883200-41892200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr19:41883200-41892600	Weak transcription	NHLF	lung
30	chr19:41883200-41892800	Weak transcription	Brain Substantia Nigra	brain
31	chr19:41883200-41892800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr19:41883200-41893200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:41883200-41893800	Weak transcription	Esophagus	oesophagus
34	chr19:41883200-41894000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr19:41883200-41894200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr19:41883200-41895400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr19:41883200-41895400	Weak transcription	Right Ventricle	heart
38	chr19:41883200-41895600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr19:41883200-41896200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr19:41883200-41896200	Weak transcription	Colonic Mucosa	Colon
41	chr19:41883200-41896200	Weak transcription	Fetal Kidney	kidney
42	chr19:41883200-41897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr19:41883200-41901400	Weak transcription	Fetal Brain Male	brain
44	chr19:41883200-41902600	Weak transcription	Right Atrium	heart
45	chr19:41883200-41902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr19:41883200-41902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:41883400-41888600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr19:41883400-41889600	Weak transcription	Fetal Brain Female	brain
49	chr19:41883400-41894600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr19:41883400-41896200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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