The 2.0 version of rSNPBase

Variant report

Variant rs58961854
Chromosome Location chr19:41940001-41940002
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41934000-41944800 Weak transcription Hela-S3 cervix
2 chr19:41934400-41945000 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr19:41934600-41944200 Weak transcription Fetal Brain Male brain
4 chr19:41934800-41945400 Weak transcription Small Intestine intestine
5 chr19:41935000-41945000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr19:41936600-41940600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr19:41936600-41944200 Strong transcription A549 lung
8 chr19:41936800-41940400 Strong transcription HUES48 Cell Line embryonic stem cell
9 chr19:41936800-41940600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr19:41936800-41944200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr19:41936800-41944200 Strong transcription Breast Myoepithelial Primary Cells Breast
12 chr19:41936800-41944200 Strong transcription Primary T cells from cord blood blood
13 chr19:41937000-41944200 Strong transcription Primary T helper naive cells fromperipheralblood blood
14 chr19:41937200-41944200 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr19:41938400-41943800 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr19:41938600-41940200 Strong transcription K562 blood
17 chr19:41938600-41945000 Weak transcription HSMMtube muscle
18 chr19:41938800-41944800 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr19:41938800-41945000 Weak transcription Fetal Kidney kidney
20 chr19:41938800-41945000 Weak transcription NHDF-Ad bronchial
21 chr19:41938800-41945200 Weak transcription Right Atrium heart
22 chr19:41939000-41940400 Strong transcription Fetal Intestine Small intestine
23 chr19:41939000-41942200 Weak transcription HepG2 liver
24 chr19:41939000-41942200 Weak transcription Osteobl bone
25 chr19:41939000-41944800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr19:41939000-41944800 Weak transcription NH-A brain
27 chr19:41939000-41945000 Weak transcription Primary B cells from cord blood blood
28 chr19:41939200-41942200 Weak transcription Brain Cingulate Gyrus brain
29 chr19:41939200-41942200 Weak transcription Brain Substantia Nigra brain
30 chr19:41939200-41942200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr19:41939200-41944600 Weak transcription Muscle Satellite Cultured Cells --
32 chr19:41939200-41944600 Weak transcription GM12878-XiMat blood
33 chr19:41939200-41944800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr19:41939200-41944800 Weak transcription Fetal Lung lung
35 chr19:41939200-41944800 Weak transcription HSMM muscle
36 chr19:41939200-41945000 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr19:41939200-41945000 Weak transcription Brain Inferior Temporal Lobe brain
38 chr19:41939400-41940400 Weak transcription Primary hematopoietic stem cells blood
39 chr19:41939400-41942000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr19:41939400-41942200 Weak transcription Aorta Aorta
41 chr19:41939400-41942200 Weak transcription Brain Anterior Caudate brain
42 chr19:41939400-41942200 Weak transcription Rectal Smooth Muscle rectum
43 chr19:41939400-41942400 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr19:41939400-41942600 Weak transcription Brain Angular Gyrus brain
45 chr19:41939400-41943600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr19:41939400-41943600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr19:41939400-41943600 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr19:41939400-41943800 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr19:41939400-41943800 Weak transcription Esophagus oesophagus
50 chr19:41939400-41944600 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015