The 2.0 version of rSNPBase

Variant report

Variant rs4075342
Chromosome Location chr1:94223806-94223807
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:94216800-94224400 Weak transcription Right Atrium heart
3 chr1:94218000-94224200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:94218800-94225200 Enhancers NHLF lung
5 chr1:94219600-94224200 Weak transcription Fetal Thymus thymus
6 chr1:94219800-94224800 Weak transcription Brain Hippocampus Middle brain
7 chr1:94219800-94226200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:94219800-94231600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:94220000-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:94220000-94224800 Weak transcription Brain Cingulate Gyrus brain
11 chr1:94220000-94254200 Weak transcription Aorta Aorta
12 chr1:94220200-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:94220600-94224200 Weak transcription HSMMtube muscle
14 chr1:94221200-94225600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:94221200-94225600 Enhancers Fetal Lung lung
16 chr1:94221200-94226600 Enhancers Placenta Placenta
17 chr1:94221400-94224200 Weak transcription NH-A brain
18 chr1:94221400-94225600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:94221400-94225600 Genic enhancers HMEC breast
20 chr1:94221600-94224400 Enhancers Skeletal Muscle Male skeletal muscle
21 chr1:94222200-94224400 Weak transcription A549 lung
22 chr1:94222200-94225000 Enhancers Skeletal Muscle Female skeletal muscle
23 chr1:94222400-94224000 Enhancers HepG2 liver
24 chr1:94222400-94224200 Weak transcription Fetal Stomach stomach
25 chr1:94222400-94225000 Enhancers Fetal Muscle Leg muscle
26 chr1:94222400-94225600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:94222400-94225800 Enhancers Adipose Nuclei Adipose
28 chr1:94222400-94228200 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr1:94222600-94224200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:94222600-94224200 Weak transcription HSMM muscle
31 chr1:94222600-94225200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:94222600-94225600 Enhancers Fetal Muscle Trunk muscle
33 chr1:94222600-94225600 Enhancers Lung lung
34 chr1:94222800-94224400 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:94222800-94224600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:94222800-94224800 Enhancers Cortex derived primary cultured neurospheres brain
37 chr1:94222800-94225000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:94223000-94224200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:94223000-94224200 Weak transcription Osteobl bone
40 chr1:94223000-94224800 Weak transcription Psoas Muscle Psoas
41 chr1:94223000-94237000 Weak transcription NHEK skin
42 chr1:94223400-94226800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr1:94223600-94224000 Enhancers ES-I3 Cell Line embryonic stem cell
44 chr1:94223600-94224400 Weak transcription Brain Anterior Caudate brain
45 chr1:94223600-94224600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:94223600-94225400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:94223600-94225600 Enhancers Primary T cells fromperipheralblood blood
48 chr1:94223600-94229200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:94223800-94224000 Enhancers Spleen Spleen
50 chr1:94223800-94224600 Flanking Active TSS Hela-S3 cervix

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Last update: Aug 31, 2015