The 2.0 version of rSNPBase

Variant report

Variant rs41267622
Chromosome Location chr1:180034222-180034223
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179970800-180076800 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:179976200-180063600 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:179981000-180059000 Strong transcription HUES64 Cell Line embryonic stem cell
4 chr1:179983600-180083400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:180000600-180039800 Strong transcription Primary T cells fromperipheralblood blood
6 chr1:180000800-180083400 Strong transcription Primary T helper cells fromperipheralblood blood
7 chr1:180002400-180085000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:180009000-180041200 Strong transcription Duodenum Mucosa Duodenum
9 chr1:180009000-180069600 Strong transcription Primary monocytes fromperipheralblood blood
10 chr1:180009200-180051800 Strong transcription Fetal Thymus thymus
11 chr1:180009200-180070000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:180010200-180040400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr1:180010200-180052000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:180010600-180051800 Strong transcription Liver Liver
15 chr1:180012800-180050400 Weak transcription Stomach Mucosa stomach
16 chr1:180013000-180080000 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr1:180016400-180049600 Weak transcription NHEK skin
18 chr1:180020000-180036400 Weak transcription Fetal Brain Male brain
19 chr1:180021400-180062200 Weak transcription Fetal Heart heart
20 chr1:180025000-180064800 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr1:180025600-180039400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:180027000-180050000 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr1:180028000-180037800 Strong transcription GM12878-XiMat blood
24 chr1:180028200-180037000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:180028600-180052200 Strong transcription Dnd41 blood
26 chr1:180029400-180035000 Strong transcription Fetal Intestine Small intestine
27 chr1:180029400-180035200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:180029400-180035200 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr1:180029400-180037200 Strong transcription Fetal Muscle Trunk muscle
30 chr1:180029600-180084800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:180030000-180035000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
32 chr1:180030000-180073000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:180030200-180035000 Strong transcription Fetal Stomach stomach
34 chr1:180030200-180037400 Strong transcription Fetal Intestine Large intestine
35 chr1:180030200-180039800 Strong transcription NHDF-Ad bronchial
36 chr1:180030200-180040200 Strong transcription Primary hematopoietic stem cells short term culture blood
37 chr1:180030200-180041800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:180030400-180034800 Strong transcription Primary T helper naive cells fromperipheralblood blood
39 chr1:180030400-180035000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr1:180030400-180035000 Strong transcription Ovary ovary
41 chr1:180030400-180035200 Strong transcription Fetal Muscle Leg muscle
42 chr1:180030400-180035400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr1:180030400-180038000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:180030400-180039400 Strong transcription HSMM muscle
45 chr1:180030400-180040000 Strong transcription Primary B cells from peripheral blood blood
46 chr1:180030400-180040000 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr1:180030400-180066600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:180030600-180039600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:180030600-180040000 Strong transcription HUES48 Cell Line embryonic stem cell
50 chr1:180030800-180035000 Strong transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015