The 2.0 version of rSNPBase

Variant report

Variant rs73039990
Chromosome Location chr1:179927472-179927473
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179923600-179928000 Active TSS GM12878-XiMat blood
2 chr1:179924800-179935600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:179924800-179937800 Weak transcription Spleen Spleen
4 chr1:179924800-179938000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:179924800-179938000 Weak transcription Lung lung
6 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:179925200-179927600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:179925200-179928200 Weak transcription Left Ventricle heart
9 chr1:179925200-179946200 Weak transcription Stomach Mucosa stomach
10 chr1:179925400-179927600 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:179925400-179927800 Enhancers Primary T helper naive cells from peripheral blood blood
12 chr1:179925400-179927800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
13 chr1:179925400-179928400 Enhancers Primary T killer memory cells from peripheral blood blood
14 chr1:179925400-179929800 Enhancers Primary T helper cells fromperipheralblood blood
15 chr1:179925400-179931000 Weak transcription Fetal Thymus thymus
16 chr1:179925400-179946000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:179925600-179928000 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr1:179925600-179928000 Enhancers Fetal Heart heart
19 chr1:179925600-179930200 Weak transcription Fetal Stomach stomach
20 chr1:179925600-179935600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:179925600-179938400 Weak transcription HSMM muscle
22 chr1:179925800-179927800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr1:179925800-179927800 Enhancers Primary T regulatory cells fromperipheralblood blood
24 chr1:179925800-179927800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:179925800-179927800 Enhancers Adipose Nuclei Adipose
26 chr1:179925800-179927800 Enhancers HUVEC blood vessel
27 chr1:179925800-179928200 Weak transcription Fetal Muscle Leg muscle
28 chr1:179925800-179929600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:179925800-179929800 Enhancers Primary T helper cells PMA-I stimulated --
30 chr1:179925800-179930200 Weak transcription Fetal Intestine Small intestine
31 chr1:179925800-179930600 Weak transcription Primary B cells from peripheral blood blood
32 chr1:179925800-179933400 Weak transcription Brain Cingulate Gyrus brain
33 chr1:179925800-179935600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:179925800-179935600 Weak transcription Stomach Smooth Muscle stomach
35 chr1:179925800-179937600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:179925800-179937600 Weak transcription Brain Hippocampus Middle brain
37 chr1:179925800-179937600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr1:179925800-179937800 Weak transcription Thymus Thymus
39 chr1:179925800-179940600 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:179926000-179927800 Enhancers Breast Myoepithelial Primary Cells Breast
41 chr1:179926000-179928400 Weak transcription Psoas Muscle Psoas
42 chr1:179926000-179931600 Weak transcription Ovary ovary
43 chr1:179926000-179937800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:179926000-179938000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:179926000-179938000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:179926000-179938000 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr1:179926000-179938000 Weak transcription Right Atrium heart
48 chr1:179926000-179938200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr1:179926000-179938400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:179926400-179928000 Enhancers Fetal Lung lung

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Last update: Aug 31, 2015