The 2.0 version of rSNPBase

Variant report

Variant rs16855049
Chromosome Location chr1:179953071-179953072
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:179926800-179961400 Weak transcription A549 lung
3 chr1:179927000-179965600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:179936400-179955600 Weak transcription Dnd41 blood
5 chr1:179936600-179958800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:179938000-179983200 Weak transcription Brain Germinal Matrix brain
7 chr1:179938600-179954600 Weak transcription Fetal Thymus thymus
8 chr1:179938600-179956400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:179938600-179956800 Weak transcription Duodenum Mucosa Duodenum
10 chr1:179938600-179956800 Weak transcription Fetal Intestine Small intestine
11 chr1:179938600-179956800 Weak transcription Fetal Stomach stomach
12 chr1:179938600-179957600 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:179938600-179959000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:179938600-179965800 Weak transcription Esophagus oesophagus
15 chr1:179938600-179975800 Weak transcription Thymus Thymus
16 chr1:179938600-179983200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:179938600-179984600 Weak transcription Lung lung
18 chr1:179938800-179953400 Weak transcription Fetal Intestine Large intestine
19 chr1:179938800-179959800 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr1:179939000-179954800 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:179939000-179989000 Weak transcription Gastric stomach
22 chr1:179939600-179955600 Weak transcription Primary hematopoietic stem cells blood
23 chr1:179939800-179956800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:179939800-179959400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:179939800-179974800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:179940000-179953400 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:179940000-179961200 Weak transcription HSMM muscle
28 chr1:179940800-179956800 Weak transcription Left Ventricle heart
29 chr1:179941000-179959000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:179941200-179957200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:179941400-180031800 Weak transcription Spleen Spleen
32 chr1:179943000-179956800 Weak transcription Primary B cells from cord blood blood
33 chr1:179943200-179955600 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr1:179943400-179956200 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr1:179944200-179953400 Weak transcription Ovary ovary
36 chr1:179945400-179954400 Weak transcription Primary T cells from cord blood blood
37 chr1:179946400-179956800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr1:179946400-179956800 Weak transcription Primary monocytes fromperipheralblood blood
39 chr1:179946400-179957200 Weak transcription Pancreas Pancrea
40 chr1:179946400-179958800 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr1:179946400-179959000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:179946400-179959000 Weak transcription Right Ventricle heart
43 chr1:179946400-179959200 Weak transcription Osteobl bone
44 chr1:179946400-179963200 Weak transcription HUVEC blood vessel
45 chr1:179946400-179965600 Weak transcription H1 Cell Line embryonic stem cell
46 chr1:179946400-179972800 Weak transcription Brain Cingulate Gyrus brain
47 chr1:179946400-179983000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr1:179946400-179989200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:179946600-179956200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:179946600-179956800 Weak transcription Liver Liver

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Last update: Aug 31, 2015