The 2.0 version of rSNPBase

Variant report

Variant rs16855052
Chromosome Location chr1:179956497-179956498
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:179926800-179961400 Weak transcription A549 lung
3 chr1:179927000-179965600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:179936600-179958800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:179938000-179983200 Weak transcription Brain Germinal Matrix brain
6 chr1:179938600-179956800 Weak transcription Duodenum Mucosa Duodenum
7 chr1:179938600-179956800 Weak transcription Fetal Intestine Small intestine
8 chr1:179938600-179956800 Weak transcription Fetal Stomach stomach
9 chr1:179938600-179957600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:179938600-179959000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:179938600-179965800 Weak transcription Esophagus oesophagus
12 chr1:179938600-179975800 Weak transcription Thymus Thymus
13 chr1:179938600-179983200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:179938600-179984600 Weak transcription Lung lung
15 chr1:179938800-179959800 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:179939000-179989000 Weak transcription Gastric stomach
17 chr1:179939800-179956800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:179939800-179959400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:179939800-179974800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:179940000-179961200 Weak transcription HSMM muscle
21 chr1:179940800-179956800 Weak transcription Left Ventricle heart
22 chr1:179941000-179959000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:179941200-179957200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:179941400-180031800 Weak transcription Spleen Spleen
25 chr1:179943000-179956800 Weak transcription Primary B cells from cord blood blood
26 chr1:179946400-179956800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr1:179946400-179956800 Weak transcription Primary monocytes fromperipheralblood blood
28 chr1:179946400-179957200 Weak transcription Pancreas Pancrea
29 chr1:179946400-179958800 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:179946400-179959000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:179946400-179959000 Weak transcription Right Ventricle heart
32 chr1:179946400-179959200 Weak transcription Osteobl bone
33 chr1:179946400-179963200 Weak transcription HUVEC blood vessel
34 chr1:179946400-179965600 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:179946400-179972800 Weak transcription Brain Cingulate Gyrus brain
36 chr1:179946400-179983000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:179946400-179989200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:179946600-179956800 Weak transcription Liver Liver
39 chr1:179946600-179957400 Weak transcription Fetal Lung lung
40 chr1:179946600-179961200 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr1:179946600-179961400 Weak transcription HepG2 liver
42 chr1:179946600-179965800 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr1:179946600-179965800 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:179946600-179983200 Weak transcription Brain Angular Gyrus brain
45 chr1:179946800-179956800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:179946800-179957000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:179946800-179957400 Weak transcription K562 blood
48 chr1:179946800-179959200 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:179946800-179959200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:179946800-179963800 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015