The 2.0 version of rSNPBase

Variant report

Variant rs12123560
Chromosome Location chr1:179941396-179941397
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:179925200-179946200 Weak transcription Stomach Mucosa stomach
3 chr1:179925400-179946000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:179926800-179961400 Weak transcription A549 lung
5 chr1:179927000-179965600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:179934600-179945000 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr1:179936000-179946400 Weak transcription NHLF lung
8 chr1:179936200-179946000 Weak transcription Fetal Lung lung
9 chr1:179936200-179946000 Weak transcription HepG2 liver
10 chr1:179936400-179955600 Weak transcription Dnd41 blood
11 chr1:179936600-179958800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:179937600-179941400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
13 chr1:179937600-179941400 Enhancers Brain Hippocampus Middle brain
14 chr1:179937800-179941400 Enhancers Skeletal Muscle Male skeletal muscle
15 chr1:179937800-179941600 Enhancers Brain Angular Gyrus brain
16 chr1:179937800-179941600 Enhancers Brain Anterior Caudate brain
17 chr1:179937800-179946200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:179938000-179941400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:179938000-179941400 Enhancers Adipose Nuclei Adipose
20 chr1:179938000-179983200 Weak transcription Brain Germinal Matrix brain
21 chr1:179938400-179941600 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr1:179938400-179943800 Weak transcription Aorta Aorta
23 chr1:179938400-179948600 Weak transcription Fetal Muscle Trunk muscle
24 chr1:179938600-179941400 Enhancers Brain Cingulate Gyrus brain
25 chr1:179938600-179942200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:179938600-179943200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:179938600-179945400 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:179938600-179946000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:179938600-179946000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:179938600-179946000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:179938600-179946000 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr1:179938600-179954600 Weak transcription Fetal Thymus thymus
33 chr1:179938600-179956400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:179938600-179956800 Weak transcription Duodenum Mucosa Duodenum
35 chr1:179938600-179956800 Weak transcription Fetal Intestine Small intestine
36 chr1:179938600-179956800 Weak transcription Fetal Stomach stomach
37 chr1:179938600-179957600 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:179938600-179959000 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:179938600-179965800 Weak transcription Esophagus oesophagus
40 chr1:179938600-179975800 Weak transcription Thymus Thymus
41 chr1:179938600-179983200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr1:179938600-179984600 Weak transcription Lung lung
43 chr1:179938800-179942400 Weak transcription Primary B cells from peripheral blood blood
44 chr1:179938800-179942400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:179938800-179953400 Weak transcription Fetal Intestine Large intestine
46 chr1:179938800-179959800 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:179939000-179943400 Weak transcription Primary T cells fromperipheralblood blood
48 chr1:179939000-179945400 Weak transcription Osteobl bone
49 chr1:179939000-179946000 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr1:179939000-179948800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015