Variant report

Variant	rs12141817
Chromosome Location	chr1:179924633-179924634
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr1:179923180-179924684	GM12878	blood:	n/a	chr1:179924661-179924672
2	POLR2A	chr1:179923378-179924732	Hela-S3	cervix:	n/a	n/a
3	MAFK	chr1:179923454-179924867	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr1:179923350-179925302	Hela-S3	cervix:	n/a	n/a
5	SMARCB1	chr1:179923540-179924671	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr1:179924600-179924750	AG04449	skin:	n/a	n/a
7	TBP	chr1:179923433-179924698	H1-hESC	embryonic stem cell:	n/a	n/a
8	YY1	chr1:179923307-179924649	ECC-1	luminal epithelium:	n/a	chr1:179923734-179923751 chr1:179923728-179923750 chr1:179923790-179923812 chr1:179924372-179924386 chr1:179923801-179923809 chr1:179923795-179923814 chr1:179923739-179923748
9	POLR2A	chr1:179923107-179924679	K562	blood:	n/a	n/a
10	CTCF	chr1:179924620-179924770	AoAF	blood vessel:	n/a	n/a
11	MYC	chr1:179922868-179925091	K562	blood:	n/a	chr1:179924517-179924527
12	CTCF	chr1:179924560-179924710	HCFaa	heart:	n/a	n/a
13	JUND	chr1:179923005-179925026	K562	blood:	n/a	chr1:179923759-179923773 chr1:179924900-179924912
14	BRCA1	chr1:179923157-179924686	Hela-S3	cervix:	n/a	chr1:179923854-179923863
15	HMGN3	chr1:179923558-179924648	K562	blood:	n/a	n/a
16	POLR2A	chr1:179923325-179924639	MCF-7	breast:	n/a	n/a
17	TCF7L2	chr1:179922851-179924697	HCT-116	colon:	n/a	n/a
18	TCF7L2	chr1:179923312-179924752	Hela-S3	cervix:	n/a	chr1:179924709-179924718 chr1:179924706-179924720
19	POLR2A	chr1:179922923-179924795	GM12878	blood:	n/a	n/a
20	TBP	chr1:179924387-179925114	Hela-S3	cervix:	n/a	n/a
21	MAZ	chr1:179922884-179924760	K562	blood:	n/a	chr1:179924517-179924527
22	RAD21	chr1:179922983-179924779	IMR90	lung:	n/a	chr1:179924714-179924726
23	SMC3	chr1:179922841-179924762	Hela-S3	cervix:	n/a	chr1:179922998-179923008
24	MAZ	chr1:179923418-179924733	Hela-S3	cervix:	n/a	chr1:179924517-179924527
25	CTCF	chr1:179924520-179924670	NHDF-neo	bronchial:	n/a	n/a
26	TAF1	chr1:179923231-179924802	MCF-7	breast:	n/a	n/a
27	CTCF	chr1:179924520-179924670	HPAF	blood vessel:	n/a	n/a
28	RFX5	chr1:179922910-179925296	Hela-S3	cervix:	n/a	chr1:179925070-179925085 chr1:179925070-179925085 chr1:179925068-179925082 chr1:179925069-179925086 chr1:179925070-179925085
29	POLR2A	chr1:179923431-179925109	K562	blood:	n/a	n/a
30	CTCF	chr1:179924440-179924690	GM12864	blood:	n/a	n/a
31	MAX	chr1:179922902-179924642	GM12878	blood:	n/a	chr1:179924517-179924527
32	UBTF	chr1:179923245-179925315	K562	blood:	n/a	n/a
33	TAF1	chr1:179923342-179924764	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr1:179923257-179924653	ECC-1	luminal epithelium:	n/a	n/a
35	YY1	chr1:179923094-179924698	GM12892	blood:	n/a	chr1:179923734-179923751 chr1:179923728-179923750 chr1:179923790-179923812 chr1:179924372-179924386 chr1:179923801-179923809 chr1:179923795-179923814 chr1:179923739-179923748
36	POLR2A	chr1:179923265-179924670	H1-neurons	neurons:	n/a	n/a
37	CEBPB	chr1:179923139-179924702	Hela-S3	cervix:	n/a	chr1:179923270-179923281
38	POLR2A	chr1:179922854-179924659	GM15510	blood:	n/a	n/a
39	POLR2A	chr1:179922863-179924753	GM18505	blood:	n/a	n/a
40	CHD1	chr1:179923564-179924750	H1-hESC	embryonic stem cell:	n/a	chr1:179923854-179923863 chr1:179923879-179923889
41	ETS1	chr1:179923563-179924650	K562	blood:	n/a	chr1:179923857-179923866 chr1:179923854-179923863
42	RELA	chr1:179922843-179924764	GM10847	blood:	n/a	chr1:179924489-179924498 chr1:179924489-179924498
43	TBL1XR1	chr1:179922871-179925063	K562	blood:	n/a	n/a
44	POLR2A	chr1:179923227-179924716	H1-neurons	neurons:	n/a	n/a
45	SIN3A	chr1:179922826-179924966	H1-hESC	embryonic stem cell:	n/a	chr1:179924336-179924350
46	SIN3AK20	chr1:179923207-179924759	PANC-1	pancreas:	n/a	n/a
47	MTA3	chr1:179922700-179924671	GM12878	blood:	n/a	n/a
48	CHD2	chr1:179922790-179924694	GM12878	blood:	n/a	chr1:179923854-179923863 chr1:179923879-179923889
49	MYC	chr1:179922829-179924633	K562	blood:	n/a	chr1:179924517-179924527
50	ZKSCAN1	chr1:179923021-179924690	Hela-S3	cervix:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:179924631-179924681	HL-60	blood:	n/a
2	chr1:179924631-179924681	LNCaP	prostate:	n/a
3	chr1:179924631-179924681	AG09319	gingival:	n/a
4	chr1:179924631-179924681	HepG2	liver:	n/a
5	chr1:179924631-179924681	MCF-7	breast:	n/a
6	chr1:179924631-179924681	Jurkat	blood:	n/a
7	chr1:179924631-179924681	SK-N-SH	brain:	n/a
8	chr1:179924631-179924681	A549	lung:	n/a
9	chr1:179924631-179924681	SKMC	muscle:	n/a
10	chr1:179924631-179924681	AoSMC	blood vessel:	n/a
11	chr1:179924631-179924681	HPAEpiC	pulmonary alveolar:	n/a
12	chr1:179924631-179924681	NT2-D1	testis:	n/a
13	chr1:179924631-179924681	HCPEpiC	choroid plexus:	n/a
14	chr1:179924631-179924681	HIPEpiC	eye:	n/a
15	chr1:179924631-179924681	NB4	blood:	n/a
16	chr1:179924631-179924681	HRE	kidney:	n/a
17	chr1:179924631-179924681	BJ	skin:	n/a
18	chr1:179924631-179924681	IMR90	lung:	fetal
19	chr1:179924631-179924681	NHBE	bronchial:	n/a
20	chr1:179924631-179924681	SK-N-MC	brain:	n/a
21	chr1:179924631-179924681	GM12878	blood:	n/a
22	chr1:179924631-179924681	ovcar-3	ovarian:	n/a
23	chr1:179924631-179924681	HCF	heart:	n/a
24	chr1:179924631-179924681	PFSK-1	brain:	n/a
25	chr1:179924631-179924681	K562	blood:	n/a
26	chr1:179924631-179924681	GM12891	blood:	n/a
27	chr1:179924631-179924681	Hela-S3	cervix:	n/a
28	chr1:179924631-179924681	Hepatocyte	liver:	n/a
29	chr1:179924631-179924681	AG10803	skin:	n/a
30	chr1:179924631-179924681	ECC-1	luminal epithelium:	n/a
31	chr1:179924631-179924681	H1-hESC	embryonic stem cell:	embryo
32	chr1:179924631-179924681	AG04450	lung:	fetal
33	chr1:179924631-179924681	NH-A	brain:	n/a
34	chr1:179924631-179924681	GM12892	blood:	n/a
35	chr1:179924631-179924681	HRPEpiC	eye:	n/a
36	chr1:179924631-179924681	HCT-116	colon:	n/a
37	chr1:179924631-179924681	Caco-2	colon:	n/a
38	chr1:179924631-179924681	MCF10A-Er-Src	breast:	n/a
39	chr1:179924631-179924681	AG04449	skin:	fetal
40	chr1:179924631-179924681	HEK293	kidney:	embryo
41	chr1:179924631-179924681	U87	brain:	n/a
42	chr1:179924631-179924681	CMK	blood:	n/a
43	chr1:179924631-179924681	SK-N-SH_RA	brain:	n/a
44	chr1:179924631-179924681	NHDF-neo	bronchial:	n/a
45	chr1:179924631-179924681	GM19239	blood:	n/a
46	chr1:179924631-179924681	PANC-1	pancreas:	n/a
47	chr1:179924631-179924681	AG09309	skin:	n/a
48	chr1:179924631-179924681	BE2_C	brain:	n/a
49	chr1:179924631-179924681	ProgFib	skin:	n/a
50	chr1:179924631-179924681	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:179844528..179853403-chr1:179920065..179927793,25	K562	blood:
2	chr1:179845348..179847730-chr1:179923811..179926342,3	MCF-7	breast:
3	chr1:179922632..179924837-chr10:27530640..27532515,2	MCF-7	breast:
4	chr1:179922139..179925093-chr1:180123797..180126783,3	K562	blood:
5	chr1:179921069..179927710-chr1:179937007..179944258,10	K562	blood:
6	chr1:179924257..179926025-chr1:179973260..179975368,2	K562	blood:
7	chr1:179849016..179853452-chr1:179922333..179928502,16	K562	blood:
8	chr1:179921867..179924634-chr1:180042656..180044466,2	MCF-7	breast:
9	chr1:179847679..179853408-chr1:179922379..179926886,15	MCF-7	breast:
10	chr1:179923952..179925915-chr1:180137472..180139404,2	MCF-7	breast:
11	chr1:179884565..179886596-chr1:179924353..179925912,2	MCF-7	breast:
12	chr1:179922809..179925375-chr1:180469288..180472844,3	MCF-7	breast:
13	chr1:179909218..179916721-chr1:179922197..179926382,9	K562	blood:
14	chr1:179924119..179925876-chr1:179942859..179944489,2	MCF-7	breast:
15	chr1:179923898..179926923-chr1:180121889..180124249,4	MCF-7	breast:
16	chr1:179923938..179925991-chr1:180198274..180200305,2	MCF-7	breast:
17	chr1:179909514..179912296-chr1:179922909..179924946,2	MCF-7	breast:
18	chr1:179842979..179846933-chr1:179922588..179926684,5	K562	blood:
19	chr1:179889749..179892017-chr1:179923918..179925424,2	MCF-7	breast:
20	chr1:179906513..179911873-chr1:179922155..179925771,5	K562	blood:
21	chr1:179923424..179925663-chr1:179935642..179938173,4	MCF-7	breast:
22	chr1:179924485..179926237-chr20:44016912..44018546,2	MCF-7	breast:
23	chr1:179848142..179854405-chr1:179919774..179927189,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260360	TF binding region
ENSG00000260360	CpG island
ENSG00000143337	Chromatin interaction
ENSG00000135837	Chromatin interaction
ENSG00000135847	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000116260	Chromatin interaction
ENSG00000261831	Chromatin interaction
ENSG00000232880	Chromatin interaction
ENSG00000107897	Chromatin interaction
ENSG00000235145	Chromatin interaction
ENSG00000121454	Chromatin interaction
ENSG00000272906	Chromatin interaction
ENSG00000169905	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10442618	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10494524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913920	0.84[EUR][1000 genomes]
rs12118985	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12120418	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12121834	0.92[ASN][1000 genomes]
rs12121845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12123139	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12123201	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12125556	0.92[ASN][1000 genomes]
rs12125693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12125893	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12130397	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12130479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12130673	0.84[EUR][1000 genomes]
rs12130675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131200	0.84[EUR][1000 genomes]
rs12132694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133136	0.84[EUR][1000 genomes]
rs12134536	0.92[ASN][1000 genomes]
rs12135751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135828	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12138201	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12138974	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12139323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139761	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12140235	0.92[ASN][1000 genomes]
rs12140589	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12140868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12144275	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16843139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16854997	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16855014	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16855019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855049	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855052	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16855070	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16855099	0.84[ASN][1000 genomes]
rs16855103	0.84[ASN][1000 genomes]
rs16855107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16855110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16855125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16855130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16855144	0.84[ASN][1000 genomes]
rs16855259	0.84[ASN][1000 genomes]
rs16855268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16855270	0.92[ASN][1000 genomes]
rs16855286	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16855289	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17299006	0.84[EUR][1000 genomes]
rs3856048	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41267622	0.84[ASN][1000 genomes]
rs4266842	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4278337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4460595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57165548	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58316647	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs58463801	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58749862	0.92[ASN][1000 genomes]
rs58844263	0.84[ASN][1000 genomes]
rs59132689	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60064848	0.84[ASN][1000 genomes]
rs60895715	0.84[ASN][1000 genomes]
rs60927554	0.84[ASN][1000 genomes]
rs60972670	0.92[ASN][1000 genomes]
rs60976015	0.84[ASN][1000 genomes]
rs61014689	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61242295	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73032352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032390	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73032397	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73034408	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73034486	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73039990	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73039999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040001	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525395	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7556630	0.85[ASN][1000 genomes]
rs9699897	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9701232	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429936	chr1:179790343-180214343	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv429947	chr1:179790518-179925104	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv1815608	chr1:179813499-180067988	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv429958	chr1:179814306-179994628	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179922600-179925400	Active TSS	Colonic Mucosa	Colon
2	chr1:179922600-179926000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr1:179922800-179924800	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr1:179922800-179924800	Active TSS	Brain Cingulate Gyrus	brain
5	chr1:179922800-179924800	Active TSS	Brain Hippocampus Middle	brain
6	chr1:179922800-179924800	Active TSS	Fetal Brain Female	brain
7	chr1:179922800-179924800	Active TSS	Pancreas	Pancrea
8	chr1:179922800-179925000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr1:179922800-179925000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:179922800-179925000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:179922800-179925200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr1:179922800-179925200	Active TSS	Left Ventricle	heart
13	chr1:179922800-179925200	Active TSS	Stomach Mucosa	stomach
14	chr1:179922800-179925400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr1:179922800-179925400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:179922800-179925400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:179922800-179925400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:179922800-179925400	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr1:179922800-179925400	Active TSS	Fetal Muscle Trunk	muscle
20	chr1:179922800-179925600	Active TSS	H1 Cell Line	embryonic stem cell
21	chr1:179922800-179925600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:179922800-179925600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr1:179922800-179925800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:179922800-179925800	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr1:179922800-179925800	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr1:179922800-179925800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:179922800-179925800	Active TSS	Right Ventricle	heart
28	chr1:179922800-179926000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:179922800-179926000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:179922800-179926000	Active TSS	Psoas Muscle	Psoas
31	chr1:179922800-179926800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:179922800-179926800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:179922800-179927000	Active TSS	Fetal Intestine Large	intestine
34	chr1:179923000-179924800	Active TSS	Colon Smooth Muscle	Colon
35	chr1:179923000-179924800	Active TSS	Lung	lung
36	chr1:179923000-179924800	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr1:179923000-179924800	Active TSS	Small Intestine	intestine
38	chr1:179923000-179925000	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr1:179923000-179925000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr1:179923000-179925000	Active TSS	HSMM	muscle
41	chr1:179923000-179925200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:179923000-179925400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:179923000-179925400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:179923000-179925400	Active TSS	Aorta	Aorta
45	chr1:179923000-179925800	Active TSS	Fetal Muscle Leg	muscle
46	chr1:179923000-179926000	Active TSS	Ovary	ovary
47	chr1:179923200-179924800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:179923200-179924800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:179923200-179924800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:179923200-179924800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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