The 2.0 version of rSNPBase

Variant report

Variant rs73040001
Chromosome Location chr1:179937999-179938000
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179924800-179938000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:179924800-179938000 Weak transcription Lung lung
3 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:179925200-179946200 Weak transcription Stomach Mucosa stomach
5 chr1:179925400-179946000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:179925600-179938400 Weak transcription HSMM muscle
7 chr1:179925800-179940600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:179926000-179938000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:179926000-179938000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:179926000-179938000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:179926000-179938000 Weak transcription Right Atrium heart
12 chr1:179926000-179938200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:179926000-179938400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:179926800-179961400 Weak transcription A549 lung
15 chr1:179927000-179965600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:179927200-179940600 Weak transcription NHDF-Ad bronchial
17 chr1:179928000-179939000 Weak transcription Fetal Heart heart
18 chr1:179931600-179938000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:179934400-179938000 Weak transcription Adipose Nuclei Adipose
20 chr1:179934600-179938000 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr1:179934600-179938000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:179934600-179938200 Weak transcription Osteobl bone
23 chr1:179934600-179939200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:179934600-179945000 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr1:179935000-179938200 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:179935200-179938400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr1:179935800-179938000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:179936000-179938000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:179936000-179938400 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:179936000-179946400 Weak transcription NHLF lung
31 chr1:179936200-179938000 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:179936200-179938400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:179936200-179938400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:179936200-179939200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:179936200-179946000 Weak transcription Fetal Lung lung
36 chr1:179936200-179946000 Weak transcription HepG2 liver
37 chr1:179936400-179938200 Weak transcription Liver Liver
38 chr1:179936400-179955600 Weak transcription Dnd41 blood
39 chr1:179936600-179938000 Weak transcription Primary B cells from cord blood blood
40 chr1:179936600-179938000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:179936600-179938600 Strong transcription Fetal Stomach stomach
42 chr1:179936600-179958800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:179936800-179938000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:179936800-179938000 Weak transcription Esophagus oesophagus
45 chr1:179936800-179938200 Weak transcription Primary hematopoietic stem cells blood
46 chr1:179936800-179938600 Strong transcription Fetal Intestine Small intestine
47 chr1:179937200-179938800 Weak transcription GM12878-XiMat blood
48 chr1:179937200-179941200 Enhancers Brain Inferior Temporal Lobe brain
49 chr1:179937400-179938000 Weak transcription Pancreas Pancrea
50 chr1:179937400-179941200 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015