Variant report

Variant	rs61904062
Chromosome Location	chr11:56295273-56295274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10501355	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17546536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17548679	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17627302	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17628586	0.98[EUR][1000 genomes]
rs17628691	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17629033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17629218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807254	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55771448	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56077409	0.88[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56163075	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901983	0.97[EUR][1000 genomes]
rs61902021	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs61902022	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61902863	0.98[EUR][1000 genomes]
rs61902883	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902885	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902915	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902916	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903315	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903316	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61903320	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903321	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61903530	0.86[EUR][1000 genomes]
rs61903531	0.86[EUR][1000 genomes]
rs61903536	0.86[EUR][1000 genomes]
rs61903537	0.86[EUR][1000 genomes]
rs61903541	0.86[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7103598	0.97[EUR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7121991	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7126549	0.98[EUR][1000 genomes]
rs7130906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939771	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7951506	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56293000-56298400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:56295200-56295600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links