Variant report

Variant	rs6765276
Chromosome Location	chr3:159552771-159552772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546339..159549535-chr3:159550770..159553340,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513545	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493475	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7615816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9290048	1.00[YRI][hapmap]
rs9290049	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820062	1.00[EUR][1000 genomes]
rs9821194	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9846673	1.00[EUR][1000 genomes]
rs9851155	1.00[EUR][1000 genomes]
rs9854679	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9861347	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
5	chr3:159547600-159552800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:159548600-159554000	Weak transcription	Fetal Stomach	stomach
8	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
9	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
11	chr3:159548800-159552800	Weak transcription	HUVEC	blood vessel
12	chr3:159548800-159554000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:159548800-159554200	Weak transcription	NH-A	brain
15	chr3:159548800-159554400	Weak transcription	NHEK	skin
16	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:159549000-159553200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:159549000-159553800	Weak transcription	Fetal Heart	heart
20	chr3:159549000-159554000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:159549000-159554000	Weak transcription	Psoas Muscle	Psoas
22	chr3:159549000-159554000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:159549000-159554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:159549000-159554200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:159549000-159554200	Weak transcription	Osteobl	bone
26	chr3:159549000-159555000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
28	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
29	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:159549200-159554000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:159549200-159554000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:159549200-159554000	Weak transcription	HSMM	muscle
33	chr3:159549200-159554200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:159549400-159554200	Weak transcription	HMEC	breast
35	chr3:159549600-159553000	Weak transcription	NHDF-Ad	bronchial
36	chr3:159549600-159553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:159549600-159554000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:159549600-159554200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:159549600-159554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:159549800-159553000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:159550000-159555000	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
43	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
44	chr3:159550600-159553000	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:159550600-159554000	Weak transcription	Brain Angular Gyrus	brain
46	chr3:159550600-159554200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:159550600-159555600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:159551400-159554200	Weak transcription	Brain Anterior Caudate	brain
49	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
50	chr3:159551800-159554000	Weak transcription	Brain Hippocampus Middle	brain

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