Variant report

Variant	rs10513545
Chromosome Location	chr3:159551459-159551460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546339..159549535-chr3:159550770..159553340,3	MCF-7	breast:
2	chr3:159504853..159507555-chr3:159550828..159552388,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10470475	1.00[TSI][hapmap]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493475	1.00[EUR][1000 genomes]
rs6765276	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	1.00[EUR][1000 genomes]
rs9290048	1.00[YRI][hapmap]
rs9290049	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9816649	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820062	1.00[EUR][1000 genomes]
rs9821194	1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9845205	0.82[MKK][hapmap];1.00[TSI][hapmap]
rs9846673	0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9850723	1.00[TSI][hapmap]
rs9851155	1.00[EUR][1000 genomes]
rs9854679	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	1.00[TSI][hapmap]
rs9861347	0.86[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	1.00[EUR][1000 genomes]
rs9878860	0.82[MKK][hapmap];1.00[TSI][hapmap]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159546200-159552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:159546400-159551800	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:159546400-159551800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:159546400-159552000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:159546400-159552000	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:159546400-159552000	Enhancers	Brain Substantia Nigra	brain
10	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
11	chr3:159547600-159552800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
13	chr3:159548600-159554000	Weak transcription	Fetal Stomach	stomach
14	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
15	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
17	chr3:159548800-159552800	Weak transcription	HUVEC	blood vessel
18	chr3:159548800-159554000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
20	chr3:159548800-159554200	Weak transcription	NH-A	brain
21	chr3:159548800-159554400	Weak transcription	NHEK	skin
22	chr3:159549000-159552600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:159549000-159553200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:159549000-159553800	Weak transcription	Fetal Heart	heart
27	chr3:159549000-159554000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:159549000-159554000	Weak transcription	Psoas Muscle	Psoas
29	chr3:159549000-159554000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:159549000-159554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:159549000-159554200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:159549000-159554200	Weak transcription	Osteobl	bone
33	chr3:159549000-159555000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
35	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
36	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:159549200-159554000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:159549200-159554000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:159549200-159554000	Weak transcription	HSMM	muscle
40	chr3:159549200-159554200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr3:159549400-159554200	Weak transcription	HMEC	breast
42	chr3:159549600-159551800	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr3:159549600-159553000	Weak transcription	NHDF-Ad	bronchial
44	chr3:159549600-159553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:159549600-159554000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:159549600-159554200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:159549600-159554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:159549800-159553000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:159550000-159555000	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links