Variant report

Variant	rs7615917
Chromosome Location	chr3:159553928-159553929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10440023	0.83[AMR][1000 genomes]
rs10470474	0.83[AMR][1000 genomes]
rs10470475	0.83[AMR][1000 genomes]
rs10513545	1.00[EUR][1000 genomes]
rs13314923	0.83[AMR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs28493475	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695486	0.83[AMR][1000 genomes]
rs4621369	0.83[AMR][1000 genomes]
rs56786891	0.83[AMR][1000 genomes]
rs6765276	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.83[AMR][1000 genomes]
rs73015941	0.83[AMR][1000 genomes]
rs73015943	0.83[AMR][1000 genomes]
rs73015951	0.83[AMR][1000 genomes]
rs73015956	0.83[AMR][1000 genomes]
rs73015967	0.83[AMR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes]
rs73017943	0.92[AMR][1000 genomes]
rs73017960	0.85[AMR][1000 genomes]
rs7612849	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7651449	0.83[AMR][1000 genomes]
rs9290049	0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	0.83[AMR][1000 genomes]
rs9814058	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9816506	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821194	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	1.00[AMR][1000 genomes]
rs9845205	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs9845849	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846391	0.83[AMR][1000 genomes]
rs9846673	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	0.85[AMR][1000 genomes]
rs9850723	0.83[AMR][1000 genomes]
rs9851155	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	0.83[AMR][1000 genomes]
rs9853973	0.83[AMR][1000 genomes]
rs9854679	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	0.83[AMR][1000 genomes]
rs9861347	0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877761	0.92[AMR][1000 genomes]
rs9878860	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880866	0.83[AMR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
5	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:159548600-159554000	Weak transcription	Fetal Stomach	stomach
7	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
8	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
10	chr3:159548800-159554000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
12	chr3:159548800-159554200	Weak transcription	NH-A	brain
13	chr3:159548800-159554400	Weak transcription	NHEK	skin
14	chr3:159549000-159554000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:159549000-159554000	Weak transcription	Psoas Muscle	Psoas
16	chr3:159549000-159554000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:159549000-159554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:159549000-159554200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:159549000-159554200	Weak transcription	Osteobl	bone
20	chr3:159549000-159555000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
22	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
23	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:159549200-159554000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:159549200-159554000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:159549200-159554000	Weak transcription	HSMM	muscle
27	chr3:159549200-159554200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:159549400-159554200	Weak transcription	HMEC	breast
29	chr3:159549600-159554000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:159549600-159554200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:159549600-159554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:159550000-159555000	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
34	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
35	chr3:159550600-159554000	Weak transcription	Brain Angular Gyrus	brain
36	chr3:159550600-159554200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:159550600-159555600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr3:159551400-159554200	Weak transcription	Brain Anterior Caudate	brain
39	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
40	chr3:159551800-159554000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:159551800-159554800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:159552000-159554000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:159552000-159554000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:159552000-159554000	Weak transcription	Brain Substantia Nigra	brain
47	chr3:159552200-159554000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
50	chr3:159553000-159554000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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