Variant report

Variant	rs73015943
Chromosome Location	chr3:159483841-159483842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10440023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13314923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4621369	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56786891	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017943	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017960	1.00[EUR][1000 genomes]
rs7612849	1.00[EUR][1000 genomes]
rs7615917	0.83[AMR][1000 genomes]
rs7651449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	1.00[EUR][1000 genomes]
rs9816506	0.83[AMR][1000 genomes]
rs9830331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832139	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9845205	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	1.00[EUR][1000 genomes]
rs9850723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.83[AMR][1000 genomes]
rs9877761	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878860	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335783	chr3:159480158-159484256	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159480400-159484200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:159480600-159484000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr3:159480600-159485400	Active TSS	Aorta	Aorta
4	chr3:159480800-159484000	Active TSS	Left Ventricle	heart
5	chr3:159480800-159484600	Active TSS	Colon Smooth Muscle	Colon
6	chr3:159480800-159485000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:159480800-159485000	Active TSS	Fetal Kidney	kidney
8	chr3:159480800-159485200	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr3:159481000-159484000	Bivalent/Poised TSS	Fetal Stomach	stomach
10	chr3:159481000-159484000	Active TSS	Lung	lung
11	chr3:159481000-159484000	Active TSS	Osteobl	bone
12	chr3:159481000-159484200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:159481000-159484200	Active TSS	NHDF-Ad	bronchial
14	chr3:159481000-159484400	Active TSS	Brain Angular Gyrus	brain
15	chr3:159481000-159484400	Active TSS	Right Atrium	heart
16	chr3:159481000-159485400	Active TSS	Brain Hippocampus Middle	brain
17	chr3:159481000-159485400	Active TSS	Right Ventricle	heart
18	chr3:159481200-159484000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:159481200-159484000	Active TSS	NHLF	lung
20	chr3:159481200-159484200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:159481200-159484200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:159481200-159484200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:159481200-159484600	Active TSS	Stomach Smooth Muscle	stomach
24	chr3:159481200-159484800	Active TSS	HSMM	muscle
25	chr3:159481200-159484800	Active TSS	HSMMtube	muscle
26	chr3:159481200-159485000	Active TSS	Brain Anterior Caudate	brain
27	chr3:159481200-159485000	Active TSS	Brain Cingulate Gyrus	brain
28	chr3:159481400-159484000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:159481400-159484000	Active TSS	Esophagus	oesophagus
30	chr3:159481400-159484000	Active TSS	NH-A	brain
31	chr3:159482000-159484000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr3:159482000-159484000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:159482200-159484200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr3:159482400-159484200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr3:159482600-159484000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:159482800-159484200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr3:159483000-159484000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:159483000-159484000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
39	chr3:159483000-159484200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:159483000-159484600	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr3:159483200-159484000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
42	chr3:159483200-159484200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:159483200-159484200	Flanking Active TSS	Placenta	Placenta
44	chr3:159483200-159484200	Bivalent Enhancer	Fetal Thymus	thymus
45	chr3:159483200-159484400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr3:159483400-159484000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr3:159483400-159484000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:159483400-159484000	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr3:159483400-159484200	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr3:159483400-159484800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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