Variant report

Variant	rs7612849
Chromosome Location	chr3:159543869-159543870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10440023	1.00[EUR][1000 genomes]
rs10470474	1.00[EUR][1000 genomes]
rs10470475	1.00[EUR][1000 genomes]
rs13314923	1.00[EUR][1000 genomes]
rs28493475	0.85[AFR][1000 genomes]
rs28695486	1.00[EUR][1000 genomes]
rs4621369	1.00[EUR][1000 genomes]
rs56786891	1.00[EUR][1000 genomes]
rs6781743	1.00[EUR][1000 genomes]
rs73015941	1.00[EUR][1000 genomes]
rs73015943	1.00[EUR][1000 genomes]
rs73015951	1.00[EUR][1000 genomes]
rs73015956	1.00[EUR][1000 genomes]
rs73015967	1.00[EUR][1000 genomes]
rs73017937	1.00[EUR][1000 genomes]
rs73017943	1.00[EUR][1000 genomes]
rs73017960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7651449	1.00[EUR][1000 genomes]
rs9290049	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9811600	1.00[EUR][1000 genomes]
rs9814058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9821194	0.84[AFR][1000 genomes]
rs9830331	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845205	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	1.00[EUR][1000 genomes]
rs9846673	0.81[AFR][1000 genomes]
rs9846819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850723	1.00[EUR][1000 genomes]
rs9851155	0.81[AFR][1000 genomes]
rs9853947	1.00[EUR][1000 genomes]
rs9853973	1.00[EUR][1000 genomes]
rs9854679	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855171	1.00[EUR][1000 genomes]
rs9861347	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9865889	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9872127	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9877761	1.00[EUR][1000 genomes]
rs9878860	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	1.00[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
2	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:159537000-159546400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:159537000-159546600	Weak transcription	Right Atrium	heart
5	chr3:159537600-159544000	Enhancers	HMEC	breast
6	chr3:159537600-159544200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:159540400-159544400	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:159540800-159544000	Enhancers	HSMMtube	muscle
9	chr3:159540800-159546400	Weak transcription	Brain Anterior Caudate	brain
10	chr3:159541400-159546400	Weak transcription	Psoas Muscle	Psoas
11	chr3:159542200-159544800	Enhancers	HSMM	muscle
12	chr3:159542200-159546600	Weak transcription	Aorta	Aorta
13	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:159542400-159544200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:159542600-159546400	Weak transcription	Adipose Nuclei	Adipose
16	chr3:159542600-159546400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:159542800-159545800	Weak transcription	HUVEC	blood vessel
18	chr3:159542800-159546200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:159543000-159546200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:159543000-159546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:159543200-159546400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:159543200-159546400	Weak transcription	A549	lung
23	chr3:159543400-159546000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:159543400-159546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:159543400-159546400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:159543400-159546400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:159543400-159546400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:159543400-159546400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:159543400-159546400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:159543400-159546400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:159543400-159546400	Weak transcription	Hela-S3	cervix
32	chr3:159543400-159546400	Weak transcription	NH-A	brain
33	chr3:159543400-159546400	Weak transcription	Osteobl	bone
34	chr3:159543400-159548400	Weak transcription	Spleen	Spleen
35	chr3:159543600-159544000	Enhancers	Liver	Liver
36	chr3:159543600-159546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:159543600-159546600	Weak transcription	Stomach Mucosa	stomach
38	chr3:159543600-159548400	Weak transcription	Left Ventricle	heart
39	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:159543800-159544200	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:159543800-159544600	Enhancers	Brain Substantia Nigra	brain
42	chr3:159543800-159545800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:159543800-159545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:159543800-159546400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:159543800-159546400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:159543800-159546400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:159543800-159546400	Weak transcription	Brain Angular Gyrus	brain
48	chr3:159543800-159546400	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:159543800-159546400	Weak transcription	Fetal Heart	heart
50	chr3:159543800-159546400	Weak transcription	Fetal Intestine Large	intestine

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