Variant report

Variant	rs9845205
Chromosome Location	chr3:159539470-159539471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10440023	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470474	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470475	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513545	0.82[MKK][hapmap];1.00[TSI][hapmap]
rs13314923	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493475	0.92[AMR][1000 genomes]
rs28695486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4621369	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56786891	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015951	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015956	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015967	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017943	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017960	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7612849	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7651449	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9290049	0.85[AMR][1000 genomes]
rs9811600	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs9820062	0.83[AMR][1000 genomes]
rs9821194	0.83[AMR][1000 genomes]
rs9830331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846673	0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs9846819	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850723	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851155	0.83[AMR][1000 genomes]
rs9853947	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854679	0.85[AMR][1000 genomes]
rs9855171	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861347	0.85[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs9865889	0.85[AMR][1000 genomes]
rs9872127	1.00[AMR][1000 genomes]
rs9877761	0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878860	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
2	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:159525600-159540600	Weak transcription	NHLF	lung
4	chr3:159526400-159541400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:159532200-159540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:159532200-159541600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:159532400-159541200	Weak transcription	HUVEC	blood vessel
8	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
9	chr3:159532600-159541400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:159533000-159539600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:159534400-159541200	Enhancers	Brain Angular Gyrus	brain
12	chr3:159535200-159542200	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:159536000-159541000	Weak transcription	Stomach Mucosa	stomach
14	chr3:159536400-159543200	Weak transcription	Esophagus	oesophagus
15	chr3:159536600-159540600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:159536600-159541200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:159536600-159543000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:159536600-159543000	Weak transcription	Pancreas	Pancrea
19	chr3:159536600-159543200	Weak transcription	Colonic Mucosa	Colon
20	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:159537000-159540600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:159537000-159541600	Weak transcription	Fetal Heart	heart
23	chr3:159537000-159542000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:159537000-159542400	Weak transcription	Adipose Nuclei	Adipose
25	chr3:159537000-159543000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:159537000-159543000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:159537000-159543000	Weak transcription	Lung	lung
28	chr3:159537000-159546400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:159537000-159546600	Weak transcription	Right Atrium	heart
30	chr3:159537200-159539600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:159537600-159544000	Enhancers	HMEC	breast
32	chr3:159537600-159544200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:159537800-159539800	Enhancers	NH-A	brain
34	chr3:159537800-159540600	Weak transcription	Left Ventricle	heart
35	chr3:159537800-159543000	Weak transcription	Right Ventricle	heart
36	chr3:159537800-159543000	Weak transcription	Spleen	Spleen
37	chr3:159538000-159540800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr3:159538000-159542200	Weak transcription	Placenta	Placenta
39	chr3:159538000-159543800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:159538200-159539800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr3:159538400-159539800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:159538400-159540200	Enhancers	Brain Hippocampus Middle	brain
43	chr3:159538400-159542400	Enhancers	Brain Substantia Nigra	brain
44	chr3:159538400-159543800	Enhancers	NHDF-Ad	bronchial
45	chr3:159538600-159539600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:159538600-159539600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr3:159538600-159539600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:159538600-159540400	Enhancers	HSMMtube	muscle
49	chr3:159538600-159540800	Enhancers	Brain Anterior Caudate	brain
50	chr3:159538800-159539800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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