Variant report

Variant	rs9872127
Chromosome Location	chr3:159546656-159546657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:159546081..159548652-chr3:159599760..159602729,2	MCF-7	breast:
2	chr3:159545989..159547250-chr3:159724070..159724936,3	MCF-7	breast:
3	chr3:159546339..159549535-chr3:159550770..159553340,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10440023	0.83[AMR][1000 genomes]
rs10470474	0.83[AMR][1000 genomes]
rs10470475	0.83[AMR][1000 genomes]
rs10513545	1.00[EUR][1000 genomes]
rs13314923	0.83[AMR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs28493475	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695486	0.83[AMR][1000 genomes]
rs4621369	0.83[AMR][1000 genomes]
rs56786891	0.83[AMR][1000 genomes]
rs6765276	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.83[AMR][1000 genomes]
rs73015941	0.83[AMR][1000 genomes]
rs73015943	0.83[AMR][1000 genomes]
rs73015951	0.83[AMR][1000 genomes]
rs73015956	0.83[AMR][1000 genomes]
rs73015967	0.83[AMR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes]
rs73017943	0.92[AMR][1000 genomes]
rs73017960	0.85[AMR][1000 genomes]
rs7612849	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7615917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651449	0.83[AMR][1000 genomes]
rs9290049	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	0.83[AMR][1000 genomes]
rs9814058	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9816506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821194	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	1.00[AMR][1000 genomes]
rs9845205	1.00[AMR][1000 genomes]
rs9845849	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846391	0.83[AMR][1000 genomes]
rs9846673	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	0.85[AMR][1000 genomes]
rs9850723	0.83[AMR][1000 genomes]
rs9851155	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	0.83[AMR][1000 genomes]
rs9853973	0.83[AMR][1000 genomes]
rs9854679	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	0.83[AMR][1000 genomes]
rs9861347	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877761	0.92[AMR][1000 genomes]
rs9878860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880866	0.83[AMR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543400-159548400	Weak transcription	Spleen	Spleen
3	chr3:159543600-159548400	Weak transcription	Left Ventricle	heart
4	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:159543800-159547400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:159543800-159547400	Weak transcription	Right Ventricle	heart
7	chr3:159543800-159548400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159543800-159548800	Weak transcription	Esophagus	oesophagus
9	chr3:159543800-159555200	Weak transcription	Lung	lung
10	chr3:159545800-159548600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:159545800-159548800	Enhancers	HUVEC	blood vessel
12	chr3:159546000-159547400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:159546200-159547200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:159546200-159552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:159546400-159546800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:159546400-159546800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:159546400-159546800	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr3:159546400-159546800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr3:159546400-159546800	Flanking Active TSS	Fetal Kidney	kidney
20	chr3:159546400-159546800	Flanking Active TSS	Psoas Muscle	Psoas
21	chr3:159546400-159546800	Flanking Active TSS	NHDF-Ad	bronchial
22	chr3:159546400-159547000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:159546400-159547000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:159546400-159547000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:159546400-159547000	Genic enhancers	HSMM	muscle
26	chr3:159546400-159547000	Enhancers	NH-A	brain
27	chr3:159546400-159547000	Flanking Active TSS	NHEK	skin
28	chr3:159546400-159547400	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:159546400-159547600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:159546400-159547600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:159546400-159547600	Enhancers	Duodenum Mucosa	Duodenum
32	chr3:159546400-159547600	Enhancers	Fetal Intestine Large	intestine
33	chr3:159546400-159547600	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr3:159546400-159547800	Enhancers	Brain Angular Gyrus	brain
35	chr3:159546400-159547800	Enhancers	Brain Germinal Matrix	brain
36	chr3:159546400-159547800	Enhancers	Fetal Muscle Leg	muscle
37	chr3:159546400-159547800	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr3:159546400-159548000	Enhancers	Liver	Liver
39	chr3:159546400-159548000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr3:159546400-159548000	Enhancers	Fetal Stomach	stomach
41	chr3:159546400-159548000	Enhancers	A549	lung
42	chr3:159546400-159548200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:159546400-159548600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:159546400-159548600	Enhancers	Hela-S3	cervix
45	chr3:159546400-159548800	Enhancers	Adipose Nuclei	Adipose
46	chr3:159546400-159548800	Enhancers	Stomach Smooth Muscle	stomach
47	chr3:159546400-159549000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:159546400-159549000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:159546400-159549000	Enhancers	Colon Smooth Muscle	Colon
50	chr3:159546400-159549000	Enhancers	Duodenum Smooth Muscle	Duodenum

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