Variant report

Variant	rs9877761
Chromosome Location	chr3:159517744-159517745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159504199..159507462-chr3:159515627..159518397,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10440023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470474	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470475	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13314923	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493475	0.85[AMR][1000 genomes]
rs28695486	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4621369	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56786891	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015941	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015943	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015951	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015956	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015967	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017943	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017960	1.00[EUR][1000 genomes]
rs7612849	1.00[EUR][1000 genomes]
rs7615917	0.92[AMR][1000 genomes]
rs7651449	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	1.00[EUR][1000 genomes]
rs9816506	0.92[AMR][1000 genomes]
rs9830331	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832139	0.85[AMR][1000 genomes]
rs9845205	0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	1.00[EUR][1000 genomes]
rs9850723	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853973	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.92[AMR][1000 genomes]
rs9878860	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:159504000-159518600	Enhancers	Brain Hippocampus Middle	brain
3	chr3:159504200-159518400	Enhancers	Brain Substantia Nigra	brain
4	chr3:159506000-159518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
6	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:159508600-159520600	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:159512600-159520800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:159513400-159522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:159513800-159518200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:159514000-159517800	Enhancers	HMEC	breast
13	chr3:159514400-159519200	Enhancers	Colon Smooth Muscle	Colon
14	chr3:159514400-159519400	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:159515400-159517800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:159515400-159518200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:159515400-159518600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:159515800-159518000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:159515800-159518200	Enhancers	NHLF	lung
20	chr3:159515800-159518400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:159515800-159518800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:159515800-159522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:159516000-159522800	Weak transcription	Aorta	Aorta
24	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:159516200-159517800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:159516200-159518200	Enhancers	Lung	lung
27	chr3:159516200-159520200	Weak transcription	HUVEC	blood vessel
28	chr3:159516400-159518400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:159516400-159518600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:159516400-159522400	Enhancers	Osteobl	bone
31	chr3:159516600-159518200	Enhancers	Fetal Heart	heart
32	chr3:159516600-159518600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr3:159516600-159518600	Enhancers	HepG2	liver
34	chr3:159516800-159518200	Enhancers	Fetal Intestine Small	intestine
35	chr3:159516800-159518600	Enhancers	Brain Angular Gyrus	brain
36	chr3:159516800-159519000	Enhancers	Fetal Intestine Large	intestine
37	chr3:159516800-159519000	Enhancers	NHDF-Ad	bronchial
38	chr3:159517000-159518800	Enhancers	Left Ventricle	heart
39	chr3:159517000-159522400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:159517200-159518000	Weak transcription	Right Atrium	heart
41	chr3:159517200-159518000	Strong transcription	HSMM	muscle
42	chr3:159517200-159518200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:159517200-159520600	Weak transcription	Fetal Stomach	stomach
44	chr3:159517200-159522000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:159517200-159522200	Weak transcription	HSMMtube	muscle
46	chr3:159517200-159522400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:159517200-159523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:159517200-159524000	Weak transcription	Liver	Liver
49	chr3:159517400-159517800	Weak transcription	A549	lung
50	chr3:159517400-159520000	Weak transcription	Brain Anterior Caudate	brain

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