Variant report

Variant	rs9846819
Chromosome Location	chr3:159543480-159543481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr3:159543099-159543806	SK-N-SH	brain:	n/a	n/a
2	MYC	chr3:159543475-159543714	MCF10A-Er-Src	breast:	n/a	n/a
3	NFIC	chr3:159543086-159543796	ECC-1	luminal epithelium:	n/a	n/a
4	FOS	chr3:159543067-159543839	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr3:159543423-159543839	MCF10A-Er-Src	breast:	n/a	n/a
6	NFIC	chr3:159543034-159543758	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr3:159543284-159543588	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000264146	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10440023	1.00[EUR][1000 genomes]
rs10470474	1.00[EUR][1000 genomes]
rs10470475	1.00[EUR][1000 genomes]
rs13314923	1.00[EUR][1000 genomes]
rs28695486	1.00[EUR][1000 genomes]
rs4621369	1.00[EUR][1000 genomes]
rs56786891	1.00[EUR][1000 genomes]
rs6781743	1.00[EUR][1000 genomes]
rs73015941	1.00[EUR][1000 genomes]
rs73015943	1.00[EUR][1000 genomes]
rs73015951	1.00[EUR][1000 genomes]
rs73015956	1.00[EUR][1000 genomes]
rs73015967	1.00[EUR][1000 genomes]
rs73017937	1.00[EUR][1000 genomes]
rs73017943	1.00[EUR][1000 genomes]
rs73017960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7612849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	0.85[AMR][1000 genomes]
rs7651449	1.00[EUR][1000 genomes]
rs9290049	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9811600	1.00[EUR][1000 genomes]
rs9814058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.85[AMR][1000 genomes]
rs9830331	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845205	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	1.00[EUR][1000 genomes]
rs9850723	1.00[EUR][1000 genomes]
rs9853947	1.00[EUR][1000 genomes]
rs9853973	1.00[EUR][1000 genomes]
rs9854679	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855171	1.00[EUR][1000 genomes]
rs9861347	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9865889	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9872127	0.85[AMR][1000 genomes]
rs9877761	1.00[EUR][1000 genomes]
rs9878860	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	1.00[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
2	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:159537000-159546400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:159537000-159546600	Weak transcription	Right Atrium	heart
5	chr3:159537600-159544000	Enhancers	HMEC	breast
6	chr3:159537600-159544200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:159538000-159543800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:159538400-159543800	Enhancers	NHDF-Ad	bronchial
9	chr3:159540400-159544400	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:159540600-159543800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:159540600-159543800	Enhancers	Colon Smooth Muscle	Colon
12	chr3:159540600-159543800	Enhancers	NHLF	lung
13	chr3:159540800-159543800	Enhancers	NHEK	skin
14	chr3:159540800-159544000	Enhancers	HSMMtube	muscle
15	chr3:159540800-159546400	Weak transcription	Brain Anterior Caudate	brain
16	chr3:159541200-159543800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:159541200-159543800	Enhancers	Fetal Intestine Large	intestine
18	chr3:159541400-159543800	Enhancers	Brain Hippocampus Middle	brain
19	chr3:159541400-159543800	Enhancers	Rectal Smooth Muscle	rectum
20	chr3:159541400-159546400	Weak transcription	Psoas Muscle	Psoas
21	chr3:159541600-159543800	Enhancers	Fetal Heart	heart
22	chr3:159541800-159543800	Enhancers	Fetal Kidney	kidney
23	chr3:159542000-159543800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr3:159542200-159543800	Enhancers	Fetal Muscle Leg	muscle
25	chr3:159542200-159544800	Enhancers	HSMM	muscle
26	chr3:159542200-159546600	Weak transcription	Aorta	Aorta
27	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:159542400-159543600	Enhancers	Stomach Mucosa	stomach
29	chr3:159542400-159544200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:159542600-159546400	Weak transcription	Adipose Nuclei	Adipose
31	chr3:159542600-159546400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:159542800-159543800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:159542800-159543800	Enhancers	Brain Angular Gyrus	brain
34	chr3:159542800-159545800	Weak transcription	HUVEC	blood vessel
35	chr3:159542800-159546200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:159543000-159543600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:159543000-159543600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr3:159543000-159543600	Enhancers	Left Ventricle	heart
39	chr3:159543000-159543800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:159543000-159543800	Enhancers	Fetal Muscle Trunk	muscle
41	chr3:159543000-159543800	Enhancers	Lung	lung
42	chr3:159543000-159543800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr3:159543000-159543800	Enhancers	Right Ventricle	heart
44	chr3:159543000-159543800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:159543000-159546200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:159543000-159546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:159543200-159543800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:159543200-159543800	Enhancers	Esophagus	oesophagus
49	chr3:159543200-159546400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:159543200-159546400	Weak transcription	A549	lung

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