Variant report

Variant	rs73017960
Chromosome Location	chr3:159540619-159540620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10440023	1.00[EUR][1000 genomes]
rs10470474	1.00[EUR][1000 genomes]
rs10470475	1.00[EUR][1000 genomes]
rs13314923	1.00[EUR][1000 genomes]
rs28695486	1.00[EUR][1000 genomes]
rs4621369	1.00[EUR][1000 genomes]
rs56786891	1.00[EUR][1000 genomes]
rs6781743	1.00[EUR][1000 genomes]
rs73015941	1.00[EUR][1000 genomes]
rs73015943	1.00[EUR][1000 genomes]
rs73015951	1.00[EUR][1000 genomes]
rs73015956	1.00[EUR][1000 genomes]
rs73015967	1.00[EUR][1000 genomes]
rs73017937	1.00[EUR][1000 genomes]
rs73017943	1.00[EUR][1000 genomes]
rs7612849	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615917	0.85[AMR][1000 genomes]
rs7651449	1.00[EUR][1000 genomes]
rs9290049	0.86[AMR][1000 genomes]
rs9811600	1.00[EUR][1000 genomes]
rs9814058	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816506	0.85[AMR][1000 genomes]
rs9830331	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845205	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	1.00[EUR][1000 genomes]
rs9846819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850723	1.00[EUR][1000 genomes]
rs9853947	1.00[EUR][1000 genomes]
rs9853973	1.00[EUR][1000 genomes]
rs9854679	1.00[AMR][1000 genomes]
rs9855171	1.00[EUR][1000 genomes]
rs9861347	0.86[AMR][1000 genomes]
rs9865889	0.86[AMR][1000 genomes]
rs9872127	0.85[AMR][1000 genomes]
rs9877761	1.00[EUR][1000 genomes]
rs9878860	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	1.00[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
2	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:159526400-159541400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:159532200-159541600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:159532400-159541200	Weak transcription	HUVEC	blood vessel
6	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
7	chr3:159532600-159541400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:159534400-159541200	Enhancers	Brain Angular Gyrus	brain
9	chr3:159535200-159542200	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:159536000-159541000	Weak transcription	Stomach Mucosa	stomach
11	chr3:159536400-159543200	Weak transcription	Esophagus	oesophagus
12	chr3:159536600-159541200	Weak transcription	Fetal Intestine Large	intestine
13	chr3:159536600-159543000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:159536600-159543000	Weak transcription	Pancreas	Pancrea
15	chr3:159536600-159543200	Weak transcription	Colonic Mucosa	Colon
16	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:159537000-159541600	Weak transcription	Fetal Heart	heart
18	chr3:159537000-159542000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:159537000-159542400	Weak transcription	Adipose Nuclei	Adipose
20	chr3:159537000-159543000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:159537000-159543000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:159537000-159543000	Weak transcription	Lung	lung
23	chr3:159537000-159546400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:159537000-159546600	Weak transcription	Right Atrium	heart
25	chr3:159537600-159544000	Enhancers	HMEC	breast
26	chr3:159537600-159544200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:159537800-159543000	Weak transcription	Right Ventricle	heart
28	chr3:159537800-159543000	Weak transcription	Spleen	Spleen
29	chr3:159538000-159540800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:159538000-159542200	Weak transcription	Placenta	Placenta
31	chr3:159538000-159543800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:159538400-159542400	Enhancers	Brain Substantia Nigra	brain
33	chr3:159538400-159543800	Enhancers	NHDF-Ad	bronchial
34	chr3:159538600-159540800	Enhancers	Brain Anterior Caudate	brain
35	chr3:159538800-159541800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:159539200-159540800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:159539400-159540800	Weak transcription	NHEK	skin
38	chr3:159539400-159541200	Weak transcription	Osteobl	bone
39	chr3:159539600-159541600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:159539600-159542200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr3:159539800-159540800	Weak transcription	HSMM	muscle
42	chr3:159539800-159541200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:159539800-159541200	Weak transcription	NH-A	brain
44	chr3:159539800-159542200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:159540000-159541200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr3:159540200-159541400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:159540200-159541400	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:159540400-159540800	Weak transcription	HSMMtube	muscle
49	chr3:159540400-159541800	Enhancers	A549	lung
50	chr3:159540400-159542200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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